FastQCFastQC Report
Sun 11 Jun 2023
EGAF00008060204

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008060204
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3332250
Sequences flagged as poor quality0
Sequence length35-76
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCTAACATGCAATACTGCAGATGCAAGTTAAACTTATCTGTTAACAGCTGCCTGCTGTTTTCTGCTCCCAGATG50230.15073899017180584No Hit
CTCAACACTCAGCCTTTATCACTCAGCTGGATTTTTTCCTTCAACAATCA39840.11955885662840422No Hit
CTTCTGTTAACAATTTGCAGGCAAATTAATGGCCTTTTCTAACATAGTTC37430.11232650611448722No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)