FastQCFastQC Report
Sun 11 Jun 2023
EGAF00008060208

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008060208
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2766710
Sequences flagged as poor quality0
Sequence length35-76
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCCTCTTGAACTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTA54460.19684029045328208No Hit
GTCAAAACGAATTAGTTCATTAATGGCTTCCAGCTTGGCTGATGACGTCC45390.16405767138586985No Hit
CTCAGGTTCTCCGGGAAGCTCCCCTTCAGTGGCGGGTACACCTTCAGGGGGTCAGCATTCTGGAGCAGGTGCATC41300.1492747703951625No Hit
GTGGGAGATGGGGGAGGGGCTGGGGGCTGAAGGGAGCAAGAAAGCTGTAGCTGTGTGGGGCTGGCAGGATGTTGA40670.14699769762642273No Hit
GTGGGGCTGGCAGGATGTTGAAGACCGCCTCTGCTGCTCTCACATGGGGACTGGGCCCAGATCCTGCTTGGTCAC38740.14002190327139452No Hit
GGGGCTGGCAGGATGTTGAAGACCGCCTCTGCTGCTCTCACATGGGGACT37040.1338774211970174No Hit
GCCTGCTCATTTCAAACAGGAGCCAATGGTGCATCCAGCTCTCAAAGACC36830.1331183969407708No Hit
GCTCATTTCAAACAGGAGCCAATGGTGCATCCAGCTCTCAAAGACCTTCCAGTCTATGGTCTCCATGGTGTTCTT36100.13047988405000885No Hit
GCTGGATAGTAGGTAGGGACAGTGGGAATCTCGTTCATCCATTCATGCGC27690.10008276978794309No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)