FastQCFastQC Report
Sun 11 Jun 2023
EGAF00008060280

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008060280
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2652539
Sequences flagged as poor quality0
Sequence length35-76
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCCAGTTCAATACTTTCCTTCCCCAAAAGCTCTATACTTTGAAGGAAAA65460.2467824224262113No Hit
CCCCTTCTAGCTTCAAGTATTCTTCTAAATTGGTTCTGGTCTACGTAAAC63800.24052426750370118No Hit
CCTGCATGTAAGAATTAAGACCAAGGGAGGGGAGAGAGAAACCCACACAT59570.2245772823698351No Hit
CCTATCTTCTCTATTCTTTTCTTCGCCTTCCCGTACTTCTGTCTTCCAGT57440.21654724021022875No Hit
CTCCTCAATCCACTTGATCCCAACTCATCTCTCATTTATTTCGGCTTCTT55520.20930889234804842No Hit
GCCCTTAGCTTTTTGTTTCCTAGCTTGTCTTTTTTCTTCTGCTTCCTACT38690.1458602493686238No Hit
CTCCCCTTTAATAAAACTTTTAAGAAGTCACATTATTGGAAAACTTAACT38230.14412606185997642No Hit
CCCTGACTTTCTGGAAATAAAATGTGTAATTACCTTTTACTCTGATCATA35050.13213754821324022No Hit
CCTCCGTCATGTTTTAGAAACCTTTTATCTTTTCCTTCCTCATGCTACTCTTCTAAGTCTTCATATTTTCTCTTA32310.12180782261825367No Hit
CTCCTCTTCTTCGTCCTGGTTAATCTGGAAGTAACGTAATTCGTAACTCT31930.12037523293719715No Hit
CTCCAGGAAAGCTTGCCTGACAGTAAACTGTGCCCAGTTTCTCTTGCTTA30230.11396627910089165No Hit
CCCCAACTAAACATACAAACTGCTTACAGATTTGCTGAAATTGTCTCAAT30140.11362698154485193No Hit
CCCATAACTGATCTGACTTTGTATGTAAATACAGAAAAAGCTTGTTCACC30030.11321228453191451No Hit
CCCTATCTTCTCTATTCTTTTCTTCGCCTTCCCGTACTTCTGTCTTCCAG29940.1128729869758748No Hit
CCATAACTGATCTGACTTTGTATGTAAATACAGAAAAAGCTTGTTCACCTGTTTTCCTCATTTTGTCCACTGGTG29770.11223209159224427No Hit
CTCTGAGTGAAGTGTACTATCCCATCACTGAAGCCCACAGGAACAAGTCCTACAATTTTAAAAAGGCTCGATGGA28490.1074065263507907No Hit
CCCCGCCTCAGTTACACATCCAAACTCTACATTTACAAAACGAATTCAGGGTGAGGAAGTAAAAACAGGTCATCT28340.10684103042405786No Hit
CCTGCCTTAAAGTTACATTCGTTCTTCCGCTCAAATCCTGATCTGGTCCA28180.10623783476887616No Hit
CTCATTTTTTCAGTGCTATTTTATCCAATTTTTGGCTTTATATTTTTCTA27540.10382505214814937No Hit
CCCTTCTAGCTTCAAGTATTCTTCTAAATTGGTTCTGGTCTACGTAAACA27340.10307105757917225No Hit
CTTAGCTTTTTGTTTCCTAGCTTGTCTTTTTTCTTCTGCTTCCTACTTTT27110.10220396382484857No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)