FastQCFastQC Report
Sun 11 Jun 2023
EGAF00008060288

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008060288
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2945010
Sequences flagged as poor quality0
Sequence length35-76
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCCAGTTCAATACTTTCCTTCCCCAAAAGCTCTATACTTTGAAGGAAAA64930.22047463336287484No Hit
CCCCTTCTAGCTTCAAGTATTCTTCTAAATTGGTTCTGGTCTACGTAAAC62370.2117819633889189No Hit
CTCCCCTTTAATAAAACTTTTAAGAAGTCACATTATTGGAAAACTTAACT53720.1824102464847318No Hit
CCTGCATGTAAGAATTAAGACCAAGGGAGGGGAGAGAGAAACCCACACAT50540.17161232050145842No Hit
CTCCTCAATCCACTTGATCCCAACTCATCTCTCATTTATTTCGGCTTCTT48520.1647532606001338No Hit
CCCCATTATATTAGAAAATAAATAAAAGGTTACCATAAGTAAGTTCCAGA46980.1595240763189259No Hit
CCTATCTTCTCTATTCTTTTCTTCGCCTTCCCGTACTTCTGTCTTCCAGT44380.15069558337662692No Hit
GCCCTTAGCTTTTTGTTTCCTAGCTTGTCTTTTTTCTTCTGCTTCCTACT41180.13982974590918196No Hit
CCCCGCCTCAGTTACACATCCAAACTCTACATTTACAAAACGAATTCAGGGTGAGGAAGTAAAAACAGGTCATCT36410.12363285693427187No Hit
CTCCTCTTCTTCGTCCTGGTTAATCTGGAAGTAACGTAATTCGTAACTCT35840.12169737963538324No Hit
CCCATAACTGATCTGACTTTGTATGTAAATACAGAAAAAGCTTGTTCACC35670.12112013201992523No Hit
CTTCCTTCTTCCTAGCTTCCTTCACCAAATCGCACTGGCTCCTGGACTCT35230.11962607936815155No Hit
CCTCCGTCATGTTTTAGAAACCTTTTATCTTTTCCTTCCTCATGCTACTCTTCTAAGTCTTCATATTTTCTCTTA35080.11911674323686508No Hit
CTCTGAGTGAAGTGTACTATCCCATCACTGAAGCCCACAGGAACAAGTCCTACAATTTTAAAAAGGCTCGATGGA33930.11521183289700204No Hit
CCATAACTGATCTGACTTTGTATGTAAATACAGAAAAAGCTTGTTCACCTGTTTTCCTCATTTTGTCCACTGGTG33510.1137856917293999No Hit
CTCCTTCCTTCTTCCTAGCTTCCTTCACCAAATCGCACTGGCTCCTGGAC33400.11341217856645647No Hit
GTCCCATAACTGATCTGACTTTGTATGTAAATACAGAAAAAGCTTGTTCA33290.11303866540351307No Hit
CCCTGACTTTCTGGAAATAAAATGTGTAATTACCTTTTACTCTGATCATA32700.11103527662045291No Hit
CCCCAACTAAACATACAAACTGCTTACAGATTTGCTGAAATTGTCTCAAT31730.10774156963813365No Hit
CTCCGTCATGTTTTAGAAACCTTTTATCTTTTCCTTCCTCATGCTACTCTTCTAAGTCTTCATATTTTCTCTTAA29480.10010152766883644No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)