FastQCFastQC Report
Sun 11 Jun 2023
EGAF00008060296

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008060296
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4882389
Sequences flagged as poor quality0
Sequence length35-76
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCCATTATATTAGAAAATAAATAAAAGGTTACCATAAGTAAGTTCCAGA65640.13444238056410499No Hit
CCTGCATGTAAGAATTAAGACCAAGGGAGGGGAGAGAGAAACCCACACAT58910.1206581450187603No Hit
CCCCAGTTCAATACTTTCCTTCCCCAAAAGCTCTATACTTTGAAGGAAAA56260.11523047426167804No Hit
CTTCCTTCTTCCTAGCTTCCTTCACCAAATCGCACTGGCTCCTGGACTCT54730.11209676246607962No Hit
CTCCTCAATCCACTTGATCCCAACTCATCTCTCATTTATTTCGGCTTCTT52440.1074064356609029No Hit
CCCCTTCTAGCTTCAAGTATTCTTCTAAATTGGTTCTGGTCTACGTAAAC49630.10165105648075154No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)