FastQCFastQC Report
Sun 11 Jun 2023
EGAF00008060310

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008060310
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3163781
Sequences flagged as poor quality0
Sequence length35-76
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCCAGTTCAATACTTTCCTTCCCCAAAAGCTCTATACTTTGAAGGAAAA84320.26651655092435284No Hit
CCCTGACTTTCTGGAAATAAAATGTGTAATTACCTTTTACTCTGATCATA75810.23961835537921242No Hit
CCTGCATGTAAGAATTAAGACCAAGGGAGGGGAGAGAGAAACCCACACAT69830.2207169206718164No Hit
CCTGACTTTCTGGAAATAAAATGTGTAATTACCTTTTACTCTGATCATAA60340.19072116559268798No Hit
CCTCCGTCATGTTTTAGAAACCTTTTATCTTTTCCTTCCTCATGCTACTCTTCTAAGTCTTCATATTTTCTCTTA48560.1534872356841387No Hit
CTCCCCTTTAATAAAACTTTTAAGAAGTCACATTATTGGAAAACTTAACT42200.13338470646356368No Hit
CTTCTGTTAACAATTTGCAGGCAAATTAATGGCCTTTTCTAACATAGTTC38830.12273289459668668No Hit
CTCCACTTACTGGTTTAAGTTGGTTTTAGTCACTGGATAAGTATTATAATAGAGCTACTTAGCTGTGGTTTTAAT38110.12045713657171592No Hit
CTCAACACTCAGCCTTTATCACTCAGCTGGATTTTTTCCTTCAACAATCA37630.11893996455506876No Hit
CTCCAGTCTACAAGTTACATGTTCCCACCCAGCATTACAGTTCTTGAACATGTTATTTCTCCACTTACTGGTTTA37310.11792851654397064No Hit
CTTCATTTTAATCTAAAAGCATTGCCCTTCTATTGGTATTAATTCGGGGC37140.11739118478807477No Hit
CTTCAAATTATTTTAATCACCTACAACTTTTAAACTAAACTTTAAGCTGTTTAAGTCACCTTCATTTTAATCTAA36190.11438844850512725No Hit
CCCCATTATATTAGAAAATAAATAAAAGGTTACCATAAGTAAGTTCCAGA34100.1077824286826427No Hit
CCCCAACTAAACATACAAACTGCTTACAGATTTGCTGAAATTGTCTCAAT32080.10139766311258586No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)