FastQCFastQC Report
Sun 11 Jun 2023
EGAF00008060350

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008060350
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2643469
Sequences flagged as poor quality0
Sequence length35-76
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATTTTTTCTTACTGGGTCTGGCTTCTCTGGCCCTTCGCATACGTGTGTCT35890.1357685677418574No Hit
CCCTAACATGCAATACTGCAGATGCAAGTTAAACTTATCTGTTAACAGCTGCCTGCTGTTTTCTGCTCCCAGATG33020.12491162181209615No Hit
CTCAACACTCAGCCTTTATCACTCAGCTGGATTTTTTCCTTCAACAATCA29860.1129576325653904No Hit
GCCTTTTCTAACATAGTTCAACCCACCAAAGACCTCGACACCATCGTTAC28020.10599708186477692No Hit
GTCTGATTAAGGGGGTGGGGGGAAAAAAGAGTAACTACCAGCCATTTCTC26580.10054969435994898No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)