FastQCFastQC Report
Sun 11 Jun 2023
EGAF00008060364

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008060364
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2559706
Sequences flagged as poor quality0
Sequence length35-76
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCTAACATGCAATACTGCAGATGCAAGTTAAACTTATCTGTTAACAGCTGCCTGCTGTTTTCTGCTCCCAGATG34380.13431229992819488No Hit
CCTATCTTCACCACGAACTGCTGCTTGCTCGCTTGCTCCTCAGTCCTAGC30770.12020911776586841No Hit
ATTTTTTCTTACTGGGTCTGGCTTCTCTGGCCCTTCGCATACGTGTGTCT30130.11770883062351692No Hit
CTCAACACTCAGCCTTTATCACTCAGCTGGATTTTTTCCTTCAACAATCA29660.11587268225335254No Hit
CTCTGAGTGAAGTGTACTATCCCATCACTGAAGCCCACAGGAACAAGTCCTACAATTTTAAAAAGGCTCGATGGA26590.10387911736738516No Hit
CCTGACTTTCTGGAAATAAAATGTGTAATTACCTTTTACTCTGATCATAA26330.10286337571580487No Hit
GTTTATTTAAAGTAAATAGGCTATTTTTTCTTACTGGGTCTGGCTTCTCT26100.10196483502402229No Hit
CCTATCTTCTCTATTCTTTTCTTCGCCTTCCCGTACTTCTGTCTTCCAGT25730.10051935651985032No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)