FastQCFastQC Report
Sun 11 Jun 2023
EGAF00008060388

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008060388
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2639157
Sequences flagged as poor quality0
Sequence length35-76
%GC46

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCTGAGTGAAGTGTACTATCCCATCACTGAAGCCCACAGGAACAAGTCCTACAATTTTAAAAAGGCTCGATGGA36080.1367103207577268No Hit
GGCCTACTCAAGCTCTTCTGAAGTTCTCCTGAGATGACTGAATATGAACCAAAGCTGCACTGTGCTGTACTTTTC34680.13140559655981057No Hit
CCCTAACATGCAATACTGCAGATGCAAGTTAAACTTATCTGTTAACAGCTGCCTGCTGTTTTCTGCTCCCAGATG29270.11090662662357714No Hit
GTCTGATTAAGGGGGTGGGGGGAAAAAAGAGTAACTACCAGCCATTTCTC28040.10624604750683647No Hit
GCTATTTTTTCTTACTGGGTCTGGCTTCTCTGGCCCTTCGCATACGTGTGTCTGCTGAGTGTTCCTGCATGTA27050.10249484968116714No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)