FastQCFastQC Report
Sun 11 Jun 2023
EGAF00008060394

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008060394
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2465513
Sequences flagged as poor quality0
Sequence length35-76
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTCCTTCTTCCTAGCTTCCTTCACCAAATCGCACTGGCTCCTGGACTCT207490.8415692799023976No Hit
CTCCTTCCTTCTTCCTAGCTTCCTTCACCAAATCGCACTGGCTCCTGGAC166540.6754780850881744No Hit
GCTCCTTCCTTCTTCCTAGCTTCCTTCACCAAATCGCACTGGCTCCTGGA131680.5340876320668356No Hit
CCTAGCTTCACCACCAAATCGTTAGCGCTCCTTCCTTCTTCCTAGCTTCCTTCACCAAATCGCACTGGCTCCTGG62350.2528885469271506No Hit
CTTCTTCCTAGCTTCCTTCACCAAATCGCACTGGCTCCTGGACTCTTTTC56010.2271738173759376No Hit
CCTTCTTCCTAGCTTCCTTCACCAAATCGCACTGGCTCCTGGACTCTTTT48250.1956996373574181No Hit
CTCGCTCCTTCCTGGAATCCTTTTTCCTAGCTTCACCACCAAATCGTTAG43480.17635275092850858No Hit
GCTCCTTCCTGGAATCCTTTTTCCTAGCTTCACCACCAAATCGTTAGCGCTCCTTCCTTCTTCCTAGCTTCCTTC41450.16811917033088042No Hit
CGCTCCTTCCTTCTTCCTAGCTTCCTTCACCAAATCGCACTGGCTCCTGG38220.15501844849327504No Hit
CACCAAATCGTTAGCGCTCCTTCCTTCTTCCTAGCTTCCTTCACCAAATCGCACTGGCTCCTGGACTCTTTTCCT33510.13591491912636436No Hit
CCTATCTTCACCACGAACTGCTGCTTGCTCGCTTGCTCCTCAGTCCTAGC32610.13226456319638144No Hit
CCTTCCTTCTTCCTAGCTTCCTTCACCAAATCGCACTGGCTCCTGGACTC31490.12772189803906936No Hit
CTCCTGGACTCTTTTCCTATCTTCACCACGAACTGCTGCTTGCTCGCTTGCTCCTCAGTCCTAGCTTCATCAAAC28570.11587852102179141No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)