FastQCFastQC Report
Sun 11 Jun 2023
EGAF00008060412

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008060412
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1354261
Sequences flagged as poor quality0
Sequence length35-76
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTCGGTGCTGGGTATGTAAGGAGCTTGATAACCACTGGCAGGTTTGCTT36240.2675998201232997No Hit
GTGGCTCTCAGTTTTCTTTGGCAGCAGCACGGCCTGGATGTTGGGCAGGA36210.26737829709339633No Hit
GGGGCTTTTAAACTTCTGTTTGCCAGCTCTGTCTTCAGTACCAGGCACTT32270.23828493916608395No Hit
GGTGGCTCTCAGTTTTCTTTGGCAGCAGCACGGCCTGGATGTTGGGCAGG30380.22432898828217016No Hit
GTGGTGATGGTCTGGCGCAGAGTAATTGTGTCAGCTTCAAAGAGCAGGACAGTTGAATCTTCAGGCTTAAGGGTC23360.17249259928477598No Hit
GTCTGGCGCAGAGTAATTGTGTCAGCTTCAAAGAGCAGGACAGTTGAATCTTCAGGCTTAAGGGTCAAACTGCCC21440.15831512537095876No Hit
GTCGGGGTGGACCTGCTTCAGCACCTTGTACACGTATACGGAGTAGCTCT19320.14266083125778561No Hit
CTCAGGAATTTGAATGGTTTTGAGAGACCCAAATGTGGTGATGGTCTGGCGCAGAGTAATTGTGTCAGCTTCAA19230.14199626216807543No Hit
GTTGTGTTGGGCTTCTAAGCAGTTGGCCAAAGGAACTTTCTACTTTTTCT17930.1323969308722617No Hit
GCTGGGTATGTAAGGAGCTTGATAACCACTGGCAGGTTTGCTTCCAAGGAGCCATTCGCTGAAAGGGACAGCTAC17750.13106779269284133No Hit
GGGTTGTGTTGGGCTTCTAAGCAGTTGGCCAAAGGAACTTTCTACTTTTT17720.13084626966293794No Hit
GCCCAATATTTGCTGAACTAGCATGAGCCATCAAGTGCTCAGGAATTTGA17660.13040322360313117No Hit
GTCGGTGCTGGGTATGTAAGGAGCTTGATAACCACTGGCAGGTTTGCTTCCAAGGAGCCATTCGCTGAAAGGGAC17340.1280403112841616No Hit
GTGCTGGGTATGTAAGGAGCTTGATAACCACTGGCAGGTTTGCTTCCAAGGAGCCATTCGCTGAAAGGGACAGCT16980.1253820349253209No Hit
GTGATGGTCTGGCGCAGAGTAATTGTGTCAGCTTCAAAGAGCAGGACAGT15800.11666879574912074No Hit
GTCGTTGACGAAGGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCGG15430.11393667838031221No Hit
GTCTGGGGGGAAGTTATGTTCCTCCTGTAGAGGTGAATTAAGTAATACTT14620.10795555657292057No Hit
GTCGTTAACGAAAGAATTCATGATGCCCATGGCCTTGGAAGAGATGCCAG14160.10455887011440188No Hit
GTTCCTTTGGGATTGAGTTGCTGCAAACTAATCCAGGCTTCTACTTGCCC13780.10175291173562555No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)