FastQCFastQC Report
Sun 11 Jun 2023
EGAF00008060428

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008060428
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2770963
Sequences flagged as poor quality0
Sequence length35-76
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGTTGTCAATTTCTGGGTGGATCCAAGTGCCCTTGTAATCTGGGTTGT69980.2525475800290368No Hit
CCCAGCTTTTCTTTATCTCCAATCTGATTCTTTAGAGAATAGGCATAGCT52840.19069182807565457No Hit
GTCCTGTTTGTCCTTCATTTGTTTCTCTGCTGCCTTTGTTACGCCCCACG49400.1782773714409034No Hit
GCACCGTCCAATCATCATCTTCTGAGCAAGGAAGACCTTCTCTGCAGGAA42450.15319583841429857No Hit
GTCCAATCATCATCTTCTGAGCAAGGAAGACCTTCTCTGCAGGAATCTCA41950.1513914115778522No Hit
GTTGTGTTGGGCTTCTAAGCAGTTGGCCAAAGGAACTTTCTACTTTTTCT35410.1277895085571334No Hit
CTCCGTGCATGTCTGTCTGGTCCAAACTATTAGGAAACAGCTTCACATAG34080.12298973317218598No Hit
CTCCTCCTTAAGCCTCTGCTCCTCGTCCTGTTTGTCCTTCATTTGTTTCT32740.11815386925050966No Hit
CTCGGGGTTGTCAATTTCTGGGTGGATCCAAGTGCCCTTGTAATCTGGGTTGTCGATCTGCCGGGGCTTCCACTC31690.11436457289397224No Hit
GTCCTTCATTTGTTTCTCTGCTGCCTTTGTTACGCCCCACGTCTCGTTGC27930.10079528308389538No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)