FastQCFastQC Report
Sun 11 Jun 2023
EGAF00008060431

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008060431
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2583319
Sequences flagged as poor quality0
Sequence length35-76
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTTGATGAAGCTAGGACTGAGGAGCAAGCGAGCAAGCAGCAGTTCGTGG56770.21975605800135406No Hit
CATTAATTGACAGCTGACCCAGGTGCTACACAGAAGTGGATTCAGTGAAT48320.18704619909504014No Hit
GTTTAGTTGGGGTAATGAAGTATTTCAGTTTTGTGAATAGATGACCTGTT45770.1771751765848507No Hit
AGTGAATCTAGGAAGACAGCAGCAGACAGGATTCCAGGAACCAGTGTTTG43420.16807835191859774No Hit
CGAAAATGGAAAGATTAATTGGGAGTGGTAGGATGAAACAATTTGGAGAA38040.14725242991670792No Hit
CAGGATTCCAGGAACCAGTGTTTGATGAAGCTAGGACTGAGGAGCAAGCGAGCAAGCAGCAGTTCGTGGTGA31270.12104583289945996No Hit
CTAGCATTAATTGACAGCTGACCCAGGTGCTACACAGAAGTGGATTCAGTGAATCTAGGAAGACAGCAGCAGAC28240.10931673556382313No Hit
GTGAATCTAGGAAGACAGCAGCAGACAGGATTCCAGGAACCAGTGTTTGATGAAGCTAGGACTGAGGAGCAAGCG26870.10401348033285862No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)