FastQCFastQC Report
Sun 11 Jun 2023
EGAF00008060433

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008060433
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2350295
Sequences flagged as poor quality0
Sequence length35-76
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTTGATGAAGCTAGGACTGAGGAGCAAGCGAGCAAGCAGCAGTTCGTGG60910.25915895664161304No Hit
GTTTCTGCTCTTCATCTAAGGTCTGAGACTTCCACCTTTGAGACCCCTTT43460.18491295773509284No Hit
GGATGAGGAGACACCAGAGCAGGAGATGGAGGAGACCCCTTGCAGGGAGC27410.1166236578812447No Hit
GGAAAAGAGTCCAGGAGCCAGTGCGATTTGGTGAAGGAAGCTAGGAAGAA25570.1087948534120185No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)