FastQCFastQC Report
Sun 11 Jun 2023
EGAF00008060436

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008060436
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3308959
Sequences flagged as poor quality0
Sequence length35-76
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTCCTTCTTCCTAGCTTCCTTCACCAAATCGCACTGGCTCCTGGACTCT62990.19036198393512885No Hit
CTCCTCAATCCACTTGATCCCAACTCATCTCTCATTTATTTCGGCTTCTT40930.12369449122820803No Hit
CTCCTTCCTTCTTCCTAGCTTCCTTCACCAAATCGCACTGGCTCCTGGAC39360.11894979659766108No Hit
CTTCTCTATTCTTTTCTTCGCCTTCCCGTACTTCTGTCTTCCAGTTTTCC34430.1040508510380455No Hit
CCTCAATCCACTTGATCCCAACTCATCTCTCATTTATTTCGGCTTCTTTT33300.10063587974344801No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)