FastQCFastQC Report
Sun 11 Jun 2023
EGAF00008060438

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008060438
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4324981
Sequences flagged as poor quality0
Sequence length35-76
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATTTTTTCTTACTGGGTCTGGCTTCTCTGGCCCTTCGCATACGTGTGTCT62830.14527231449109257No Hit
CCTGCATGTAAGAATTAAGACCAAGGGAGGGGAGAGAGAAACCCACACAT62500.1445093053587981No Hit
CTCCTCAATCCACTTGATCCCAACTCATCTCTCATTTATTTCGGCTTCTT60350.13953818525445544No Hit
CTCAACACTCAGCCTTTATCACTCAGCTGGATTTTTTCCTTCAACAATCA51020.11796583615049407No Hit
CTTCTGTTAACAATTTGCAGGCAAATTAATGGCCTTTTCTAACATAGTTC48120.11126060438184583No Hit
CTGACTTTCTGGAAATAAAATGTGTAATTACCTTTTACTCTGATCATAATCTCCCACCTGTCTAAGAGGTTATTT45780.10585017598921244No Hit
CCTGACTTTCTGGAAATAAAATGTGTAATTACCTTTTACTCTGATCATAA45440.10506404536806058No Hit
CCCTAACATGCAATACTGCAGATGCAAGTTAAACTTATCTGTTAACAGCTGCCTGCTGTTTTCTGCTCCCAGATG43570.10074032695172534No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)