FastQCFastQC Report
Sun 11 Jun 2023
EGAF00008060446

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008060446
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2780316
Sequences flagged as poor quality0
Sequence length35-76
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGGAATTTGAATGGTTTTGAGAGACCCAAATGTGGTGATGGTCTGGCGCAGAGTAATTGTGTCAGCTTCAAAG77570.2789970636431255No Hit
CTCAGGAATTTGAATGGTTTTGAGAGACCCAAATGTGGTGATGGTCTGGCGCAGAGTAATTGTGTCAGCTTCAA76420.2748608431559578No Hit
CTGGCGCAGAGTAATTGTGTCAGCTTCAAAGAGCAGGACAGTTGAATCTT51430.1849789736130713No Hit
GGTCGGTGCTGGGTATGTAAGGAGCTTGATAACCACTGGCAGGTTTGCTT49760.1789724621230105No Hit
CTCCTTCCTTCTTCCTAGCTTCCTTCACCAAATCGCACTGGCTCCTGGAC47320.17019648126328088No Hit
CTTCCTTCTTCCTAGCTTCCTTCACCAAATCGCACTGGCTCCTGGACTCT44890.16145646753822226No Hit
GTCTGGCGCAGAGTAATTGTGTCAGCTTCAAAGAGCAGGACAGTTGAATCTTCAGGCTTAAGGGTCAAACTGCCC41090.14778895636323353No Hit
CCCCATTATATTAGAAAATAAATAAAAGGTTACCATAAGTAAGTTCCAGA39490.14203421481586984No Hit
GCTCCTTCCTTCTTCCTAGCTTCCTTCACCAAATCGCACTGGCTCCTGGA34700.12480595730844984No Hit
GCTGGGTATGTAAGGAGCTTGATAACCACTGGCAGGTTTGCTTCCAAGGAGCCATTCGCTGAAAGGGACAGCTAC33680.12113730957200548No Hit
CCCCGCCTCAGTTACACATCCAAACTCTACATTTACAAAACGAATTCAGGGTGAGGAAGTAAAAACAGGTCATCT32950.11851170874102081No Hit
CCCCTTCTAGCTTCAAGTATTCTTCTAAATTGGTTCTGGTCTACGTAAAC32420.11660545060345659No Hit
CCCGCCTCTGATTTCTTCTGGGTTCTTGGTGGCGATCAGTCTGTTCTGCA32200.11581417364069407No Hit
GGGGCTTTTAAACTTCTGTTTGCCAGCTCTGTCTTCAGTACCAGGCACTT32030.11520273235128668No Hit
CTCCCCTTTAATAAAACTTTTAAGAAGTCACATTATTGGAAAACTTAACT31930.11484306100457645No Hit
GTCGGTGCTGGGTATGTAAGGAGCTTGATAACCACTGGCAGGTTTGCTTCCAAGGAGCCATTCGCTGAAAGGGAC31490.11326050707905144No Hit
CCTATCTTCTCTATTCTTTTCTTCGCCTTCCCGTACTTCTGTCTTCCAGT31020.11157005174951336No Hit
GCCGGCTGGTAGTAACAGGTGACGTTGGTGGCACTGGGGATGATGTTTTGTTCCGCCAGCACACGCAAGGCCAGG30240.10876461524517357No Hit
CTCCGCTCGTCATCCACCTGCAGCAGCACATCCTTCAGCTTCTTCTCGGT30070.10815317395576618No Hit
GCCCAATATTTGCTGAACTAGCATGAGCCATCAAGTGCTCAGGAATTTGA29960.10775753547438492No Hit
CCCCGCCTCTGATTTCTTCTGGGTTCTTGGTGGCGATCAGTCTGTTCTGC27840.10013250292412806No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)