FastQCFastQC Report
Fri 10 May 2024
EGAF00008061616

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008061616
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences30043581
Total Bases1.4 Gbp
Sequences flagged as poor quality0
Sequence length35-51
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN401568213.366189603030346No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACCTCTGCAGCGATCTGGG587910.19568572734388756No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACCTCTGCAGCGATCTCGG374400.12461896602805106No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)