FastQCFastQC Report
Wed 8 May 2024
EGAF00008061622

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008061622
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19051784
Total Bases886.9 Mbp
Sequences flagged as poor quality0
Sequence length35-51
%GC50

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[FAIL]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN482628525.332457054940367No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACATACCAACGCATCTCGT572690.3005965215645947No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)