FastQCFastQC Report
Sun 11 Jun 2023
EGAF00008061625

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008061625
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18933329
Sequences flagged as poor quality0
Sequence length35-51
%GC50

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[FAIL]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN422783322.330108984003814No Hit
TGTCTCTTATACACATCTGACGCTGCCGACGACGCAGCAATTGTGTAGAT588360.31075359224994187No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG276750.14617080810247368No Hit
CTGTCTCTATACACATCTGACGCTGCCGACGACGCAGCAATTGTGTAGAT266520.14076763785174812No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)