FastQCFastQC Report
Sun 11 Jun 2023
EGAF00008066278

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008066278
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6146
Sequences flagged as poor quality0
Sequence length105
%GC51

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CACTGTTCACCATAAACGTGACGATGAGGGACATAAAAAGTAAAAATGTC310.5043931012040351No Hit
CTAAAGGTCTAGGAGCTAAAGAATGGAACAACTCACTAAAAACCAAGCTG200.3254149040026033No Hit
TTGGTCGTCGGGTACGCAATCGCCGCCAGTTAAATAGCTTGCAAAATACG160.26033192320208265No Hit
CTTGGGAGCGTGCTGGTGCTGATGCTTCCTCTGCTGGTATGGTTGACGCC160.26033192320208265No Hit
GATGAATTGGCACAATGCTACAATGTGCTCCCCCAACTTGATATTAATAA150.24406117800195248No Hit
CGGTTATCCATCTGCTTATGGAAGCCAAGCATTGGGGATTGAGAAAGAGT130.21151968760169215No Hit
AAGATGATGCTCGTTATGGTTTCCGTTGCTGCCATCTCAAAAACATTTGG110.17897819720143182No Hit
AGCTTAATCAAGATGATGCTCGTTATGGTTTCCGTTGCTGCCATCTCAAA100.16270745200130166No Hit
CTAAAGGTGCTTTGACTTATACCGATATTGCTGGCGACCCTGTTTTGTAT80.13016596160104132No Hit
TGTGCCAGCACGATCCAATCTCGCATAACTTGTATCATGAGTATTCAGCT70.11389521640091116No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)