FastQCFastQC Report
Sun 11 Jun 2023
EGAF00008066315

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008066315
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences231526
Sequences flagged as poor quality0
Sequence length100
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TACGTGCCAGCACGATCCAATCTCGCATAACTTGTATCATGAGTAGGACA2910.12568782771697348No Hit
TACGTGCCAGCACGATCCAATCTCGCATAACTTGTATCATGAGTACAAGC2880.12439207691576756No Hit
TACGTGCCAGCACGATCCAATCTCGCATAACTTGTATCATGAGTCCTGAA2730.117913322909738No Hit
TACGTGCCAGCACGATCCAATCTCGCATAACTTGTATCATGAGTTCTAGT2610.11273031970491436No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)