FastQCFastQC Report
Sun 11 Jun 2023
EGAF00008066332

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008066332
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences450404
Sequences flagged as poor quality0
Sequence length100
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCACACGTCTGAACTCCAGTCACCGTAGCTTATCTCGTATGCCGTCTTCT22940.5093205211321392TruSeq Adapter, Index 22 (96% over 27bp)
CGTGCCAGCACGATCCAATCTCGCATAACTTGTATCATGAGTAGGACACT4950.10990133302546158No Hit
CGTGCCAGCACGATCCAATCTCGCATAACTTGTATCATGAGTTCTAGTTG4610.10235255459542988No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)