FastQCFastQC Report
Sun 11 Jun 2023
EGAF00008066345

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008066345
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7261
Sequences flagged as poor quality0
Sequence length105
%GC51

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCAGCATCACCCATGCCTACAGTATTGTTATCGGTAGCAAGCACATCAC200.27544415369783776No Hit
TTAACCTGACTATTCCACTGCAACAACTGAACGGACTGGAAACACTGGTC170.23412753064316208No Hit
TGACTTTGAGCGTATCGAGGCTCTTAAACCTGCTATTGAGGCTTGTGGCA150.20658311527337833No Hit
GTCTCCAGCCACTTAAGTGAGGTGATTTATGTTTGGTGCTATTGCTGGCG130.17903869990359456No Hit
TGTGCCAGCACGATCCAATCTCGCATAACTTGTATCATGAGTACAAGCTC100.13772207684891888No Hit
TGTGCCAGCACGATCCAATCTCGCATAACTTGTATCATGAGTACCATTTG100.13772207684891888No Hit
TGACCATGCCGCTTTTCTTGGCACGATTAACCCTGATACCAATAAAATCC90.12394986916402699No Hit
TTAATGTGACCGTTTATCGCAATCTGCCGACCACTCGCGATTCAATCATG90.12394986916402699No Hit
TGTGCCAGCACGATCCAATCTTGCATAGGTCTTCTGCCATTTCTTATCTC80.11017766147913512No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)