FastQCFastQC Report
Sun 11 Jun 2023
EGAF00008066346

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008066346
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences69
Sequences flagged as poor quality0
Sequence length105
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCATCTGAATGCAATGAAGAAAACCACCATTACCAGCATTAACCGTCAAA1521.73913043478261No Hit
ACCTTGCTGCTAAAGGTCTAGGAGCTAAAGAATGGAACAACTCACTAAAA1318.84057971014493No Hit
CCTTATGGCCGTCAACATACATATCACCATTATCGAACTCAACGCCCTGC710.144927536231885No Hit
CAGTGGAATAGTCAGGTTAAATTTAATGTGACCGTTTATCGCAATCTGCC68.695652173913043No Hit
ACATCTGTCAACGCCGCTAATCAGGTTGTTTCTGTTGGTGCTGATATTGC45.797101449275362No Hit
TGCCAGCACGATCCAATCTCGCATAAATGATTTGTGGATATCCTGGCCAC22.898550724637681No Hit
CAGCACGATCCAATCTCGCATATATCGAAAGATGTCTCTCAATGAAGAGA22.898550724637681No Hit
TGTGCCAGCACGATCCAATCTCGCATAGAAAGATACCCACCAGGCTGGCC11.4492753623188406No Hit
CAGCACGATCCAATCTCGCATAGCAGTTTGTCAGCCTAGCCAGCCGCTCC11.4492753623188406No Hit
CAGCACGATCCAATCTCGCATACCATCTCTCGGCGAGAACATGGTGCGCA11.4492753623188406No Hit
CAGCACGATCCAATCTCGCATATCACAAACCTTACCGGGCAGTTAGAGGT11.4492753623188406No Hit
ACCTTGCTGCTAAAGGTCTAGGAGCTAAAGAATGGAACAACTCACTAACA11.4492753623188406No Hit
ACATCTGTCAACGCCGCTAATCAGGTAGTTTCTGTTGGTGCTGATATTGC11.4492753623188406No Hit
ACATCTGTCAACGCCGCTAATCAGGTCGTTTCTGTTGGTGCTGATATTGC11.4492753623188406No Hit
TGCCGCACGATCCAATCTCGCATACGAAGATTTGGCAGTGCATTGATGTG11.4492753623188406No Hit
GCATAGTTAAACAATAACCAGCCATTGTCCCTAGCTTGCTTTTCTTTCTT11.4492753623188406No Hit
CCTTATGGCCGTCAACATACATATCACCATTATCGACCTCAACGCCCTTC11.4492753623188406No Hit
TGTGCCAGCACGATCCAATCTCGCATGCAATTTAATCAGACGCTGCAGGA11.4492753623188406No Hit
CCATCTGAATGCAATGAAGAAAACCTCCATTACCAGCATTAACCGTCACA11.4492753623188406No Hit
AAAATGAAGACTCTGATTCCCAGCCAGCACAGGGCTCATCTGCATGTTTG11.4492753623188406No Hit
TGTGCCAGCACGATCCAATCTCGCATAGTATCATGCCCGATATCTTGTTT11.4492753623188406No Hit
GTGCCAGCACGATCCAATCTCGCATAACTCCTCTCGGCGAGAACATGGTG11.4492753623188406No Hit
TGTGCCAGCACGATCCAAGATCGCATAATTCGACTCCTGCCCCTGCTGGA11.4492753623188406No Hit
GTGCCAGCACGATCCAATCTCGCATATATTCACATGAACATATGTATCTT11.4492753623188406No Hit
GCCAGCACCTCGCATAACATAATAACTGATCTGGCCAAGGCACACTTTCT11.4492753623188406No Hit
TGCCAGCACGATCCAATCTCGCATATAAAATAACGACAGGCCGAAGGAAG11.4492753623188406No Hit
CAGCACGATCCAATCTCGCATATCTTATTTCAAAGGAACACTGACATCAA11.4492753623188406No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)