FastQCFastQC Report
Sun 11 Jun 2023
EGAF00008066368

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008066368
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences328411
Sequences flagged as poor quality0
Sequence length100
%GC49

[WARN]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTGCCAGCACGATCCAATCTCGCATAACTTGTATCATGAGTAGGACACT4840.14737630590936357No Hit
CGTGCCAGCACGATCCAATCTCGCATAACTTGTATCATGAGTACAAGCTC3520.1071827679340826No Hit
CGTGCCAGCACGATCCAATCTCGCATAACTTGTATCATGAGTCCTGAATC3330.10139733443764064No Hit
CGTGCCAGCACGATCCAATCTCGCATAACTTGTATCATGAGTTCTAGTTG3300.10048384493820244No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)