FastQCFastQC Report
Sun 11 Jun 2023
EGAF00008066411

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008066411
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8216
Sequences flagged as poor quality0
Sequence length105
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TAGAGTCAATAGCAAGGCCACGACGCAATGGAGAAAGACGGAGAGCGCCA240.2921129503407984No Hit
GTCTGTTGAACACGACCAGAAAACTGGCCTAACGACGTTTGGTCAGTTCC230.27994157740993186No Hit
TATTGTTATCGGTAGCAAGCACATCACCTTGAATGCCACCGGAGGCGGCT230.27994157740993186No Hit
CTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCACTTCTGCCGTT190.23125608568646544No Hit
ATGTGGTAGAAGTCGTCATTTGGCGAGAAAGCTCAGTCTCAGGAGGAAGC180.21908471275559885No Hit
ATTAGAGCGCATGACAAGTAAAGGACGGTTGTCAGCGTCATAAGAGGTTT150.18257059396299902No Hit
TGTGCCAGCACGATCCAATCTCGCATAACTTGTATCATGAGTACCATTTG140.17039922103213243No Hit
GTAAAAAACGTTCTGGCGCTCGCCCTGGTCGTCCGCAGCCGTTGCGAGGT120.1460564751703992No Hit
TGTGCCAGCACGATCCAATCTCGCATAACTTGTATCATGAGTATTCAGCT90.10954235637779942No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)