FastQCFastQC Report
Sun 11 Jun 2023
EGAF00008066412

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008066412
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1135
Sequences flagged as poor quality0
Sequence length105
%GC51

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCGGATATTTCTGATGAGTCGAAAAATTATCTTGATAAAGCAGGAATTAC201.762114537444934No Hit
TACATCACTCCTTCTGCACGTAATTTTTGACGCACGTTTTCTTCTGCGTC201.762114537444934No Hit
GGCGCCACCAGCAAGAGCAGAAGCAATACCGCCAGCAATAGCACCAAACA100.881057268722467No Hit
GAGTCACATTTTGTTCATGGTAGAGATTCTCTTGTTGACATTTTAAAAGA90.7929515418502203No Hit
CATGAGTCAAGTTACTGAACAATCCGTACGTTTCCAGACCGCTTTGGCCT60.5286343612334802No Hit
TAGAAATATCCTTTGCAGTAGCGCCAATATGAGAAGAGCCATACCGCTGA50.4405286343612335No Hit
GTGCCAGCACGATCCAATCTCGCATACGACCTAATTTCTCCTGGAAGCAA30.2643171806167401No Hit
GTGCCAGCACGATCCAATCTCGCATATCAGAACAAACCACGAAAACCCTC20.1762114537444934No Hit
GTGCCAGCACGATCCAATCTCGCATATCTCGACTCCATCACAGATCTCCT20.1762114537444934No Hit
GTGCCAGCACGATCCAATCTCGCATAACTTAACCTCAGGAGTTGTCAAGG20.1762114537444934No Hit
GTGCCAGCACGATCCAATCTCGCATATCATAACATGGGCGGCCAGGCTCT20.1762114537444934No Hit
GTGCCAGCACGATCCAATCTCGCATAACTTGTATCATGAGTACAAGCTCC20.1762114537444934No Hit
GTGCCAGCACGATCCAATCTCGCATAGTACTTTAAACCACGAAAACCCTC20.1762114537444934No Hit
GTGCCAGCACGATCCAATCTCGCATAACTTGTATCATGAGTGCTTCTTCG20.1762114537444934No Hit
GTGCCAGCACGATCCAATCTCGCATAAATGGAAACGGCGAGAACATGGTG20.1762114537444934No Hit
GTGCCAGCACGATCCAATCTCGCATACATTGTTACAGAAAGGCTCCACGG20.1762114537444934No Hit
GTGCCAGCACGATCCAATCTCGCATACATACAAGGATGGTCTCCAGACCC20.1762114537444934No Hit
GTGCCAGCACGATCCAATCTCGCATAGGTACATTTGTAGGATGGCGTGTA20.1762114537444934No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)