FastQCFastQC Report
Sun 11 Jun 2023
EGAF00008066422

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008066422
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2589
Sequences flagged as poor quality0
Sequence length105
%GC51

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTTTGTTAACGTATTTAGCCACATAGAAACCAACAGCCATATAACTGGT190.7338740826573967No Hit
GTTTCTGATAAGTTGCTTGATTTGGTTGGACTTGGTGGCAAGTCTGCCGC150.5793742757821553No Hit
CACGGAGTGCTTAATCCAACTTACCAAGCTGGGTTACGACGCGACGCCGT120.4634994206257242No Hit
CAGCAAGGAAGCCAAGATGGGAAAGGTCATGCGGCATACGCTCGGCGCCA110.4248744689069139No Hit
AACGCCGCTAATCAGGTTGTTTCTGTTGGTGCTGATATTGCTTTTGATGC90.34762456546929316No Hit
TGTGCCAGCACGATCCAATCTCGCATAACTTGTATCATGAGTACCATTTG60.2317497103128621No Hit
TGTGCCAGCACGATCCAATCTCGCATAACTTGTATCATGAGTGGAATTGG50.19312475859405176No Hit
TGTGCCAGCACGATCCAATCTCGCATAACTTGTATCATGAGTGCTTCTTC30.11587485515643105No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)