FastQCFastQC Report
Sun 11 Jun 2023
EGAF00008066429

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008066429
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences266683
Sequences flagged as poor quality0
Sequence length100
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTGCCAGCACGCGGCTGAGCTCCCGCAGGAAGTTATCTCGTATGCCGTC33701.2636726000532468No Hit
CGTGCCAGCACGATCCTGAAATTCTGTTAACGAATCCTTCTCTTTATCTC9500.3562281810239123No Hit
CGTGCCAGCACGATCCAATCTCGCATAACTTGTATCATGAGTAGGACACT3300.12374242077672742No Hit
CGTGCCAGCACAGCTGCAGGTATAACTGGTTTGCCTTGTTATCTCGTATG3050.11436799496030868No Hit
CGTGCCAGCACGATCCAATCTCGCATAACTTGTATCATGAGTACAAGCTC2950.11061822463374119No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)