FastQCFastQC Report
Sun 11 Jun 2023
EGAF00008066438

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008066438
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4451
Sequences flagged as poor quality0
Sequence length105
%GC51

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGCGAATATCCTTAAGAGGGCGTTCAGCAGCCAGCTTGCGGCAAAACT280.6290721186250281No Hit
AAAAAGAGATTGCTGGCATTCAGTCGGCGACTTCACGCCAGAATACGAAA210.471804088968771No Hit
AACCATGAAACCAACATAAACATTATTGCCCGGCGTACGGGGAAGGACGT210.471804088968771No Hit
GGTACGGTCAGGCATCCACGGCGCTTTAAAATAGTTGTTATAGATATTCA110.24713547517411816No Hit
TGTGCCAGCACGATCCAATCTCGCATAACTTGTATCATGAGTATTCAGCT90.20220175241518762No Hit
TGTGCCAGCACGATCCAATCTCGCATAACTTGTATCATGAGTGCTTCTTC70.15726802965625702No Hit
TGTGCCAGCACGATCCAATCTCGCATAACTTGTATCATGAGTGGAATTGG60.13480116827679173No Hit
TGTGCCAGCACGATCCAATCTCGCATAACTTGTATCATGAGTACCATTTG60.13480116827679173No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)