FastQCFastQC Report
Sun 11 Jun 2023
EGAF00008066448

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008066448
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences55
Sequences flagged as poor quality0
Sequence length105
%GC46

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTATAACAACTATTTTAAAGCGCCGTGGATGCCTGACCGTACCGAGGCTA1934.54545454545455No Hit
CACCGGAGGCGGCTTTTTGACCGCCTCCAAACAATTTAGACATGGCGCCA1425.454545454545453No Hit
TGACCAAGAACGTGATTACTTCATGCAGCGTTACCATGATGTTATTTCTT916.363636363636363No Hit
TTCATGCAGCGTTACCATGATGTTATTTCTTCATTTGGAGGTAAAACCTC610.909090909090908No Hit
TCATCCTTAATACCTTTCTTTTTGGGGTAATTATACTCATCGCGAATATC47.2727272727272725No Hit
TGACCAAGAACGTGATTACCTCATGTAGCGTTACCATGATGTTATTTCTT11.8181818181818181No Hit
CACGAAGCGTCGAGAACATGGTGCGCAGGTTCTTGGTGACCCTCCGGATT11.8181818181818181No Hit
CTATAACAACTATTCTAAAGCGCCGTGGATGCCTGACCGTACCGAGGCTA11.8181818181818181No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)