FastQCFastQC Report
Sun 11 Jun 2023
EGAF00008066451

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008066451
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences414618
Sequences flagged as poor quality0
Sequence length100
%GC49

[WARN]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTACGTGCCAGCACGATCCAATCTCGCATAACTTGTATCATGAGTAGGAC6080.14664100449088077No Hit
GTACGTGCCAGCACGATCCAATCTCGCATAACTTGTATCATGAGTCCTGA5360.12927562238011855No Hit
GTACGTGCCAGCACGCGGCTGAGCTCCCGCAGGAAGTTATCTCGTATGCC5340.1287932506548196No Hit
GTACGTGCCAGCACGATCCAATCTCGCATAACTTGTATCATGAGTTCTAG5320.12831087892952067No Hit
GTACGTGCCAGCACGATCCAATCTCGCATAACTTGTATCATGAGTACAAG4820.11625158579704692No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)