FastQCFastQC Report
Sun 11 Jun 2023
EGAF00008066457

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008066457
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences289901
Sequences flagged as poor quality0
Sequence length100
%GC49

[WARN]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTGCCAGCACGATCCAATCTCGCATAACTTGTATCATGAGTAGGACACT4100.14142759079823802No Hit
CGTGCCAGCACGATCCAATCTCGCATAACTTGTATCATGAGTCCTGAATC3180.10969261920448704No Hit
CGTGCCAGCACGCGGCTGAGCTCCCGCAGGAAGTTATCTCGTATGCCGTC3110.10727800180061468No Hit
CGTGCCAGCACGATCCAATCTCGCATAACTTGTATCATGAGTACAAGCTC2910.10037909493240797No Hit
CGTGCCAGCACGATCCAATCTCGCATAACTTGTATCATGAGTTCTAGTTG2900.10003414958899763No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)