FastQCFastQC Report
Sun 11 Jun 2023
EGAF00008066494

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008066494
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences204
Sequences flagged as poor quality0
Sequence length105
%GC50

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTTTTGTTAACGTATTTAGCCACATAGAAACCAACAGCCATATAACTGG3517.15686274509804No Hit
AGAGCCATACCGCTGATTCTGCGTTTGCTGATGAACTAAGTCAACCTCAG115.392156862745098No Hit
CTCATATCTAAACCAGTCCTTGACGAACGTGCCAAGCATATTAAGCCACT41.9607843137254901No Hit
GCCAGCACGATCCAATCTCGCATATGAGCTAGCCCGGGTGGTCGGGCCAG20.9803921568627451No Hit
GCCAGCACGATCCAATCTCGCATAACAGATACCCCTGCCCTGTCTCCTGC20.9803921568627451No Hit
GCCAGCACGATCCAATCTCGCATAGAAACATTCGGCGAGAACATGGTGCG10.49019607843137253No Hit
CAGCACGATCCAATCTCGCATAATTGGAATGTGGACATCTTTGGCATCTC10.49019607843137253No Hit
GCCAGCACGATCCAATCTCGCATAATATAATCCCTGGGCTCCTTCCCAAG10.49019607843137253No Hit
TGTGCCAGCACGATCCAATCTCGCATAGATGTAAAACCGCTGGAGAGTCG10.49019607843137253No Hit
TGTGCCAGCACGATCCAATCTCGCATAACAACTTTCGGCGAGAACATGGT10.49019607843137253No Hit
GCCAGCACGATCCAATCTCGCATACTACCTCTAACCACGAAAACCCACAC10.49019607843137253No Hit
GCCAGCACGATCCAATCTCGCATAACAGAAAGACGTTACTTGCTAGTCTG10.49019607843137253No Hit
TGTGCCAGCACGATCCAATCTCGCATAACAAGAATAACCACGAAAACCCT10.49019607843137253No Hit
CAGCACGATCCAATCTCGCATATGAAGTAACATCATGCCGAACAGGCTCC10.49019607843137253No Hit
GTGCCAGCACGATCCAATCTCGCATATTAAGAAACTTTCCCCCTTTTTCG10.49019607843137253No Hit
CAGCACGATCCAATCTCGCATACATCAACAAGGGTTGTCAGTAGGGTCTG10.49019607843137253No Hit
GCCAGCACGATCCAATCTCGCATAATTCAAGACGGCGAGGACATGGTGCG10.49019607843137253No Hit
GCCAGCACGATCCAATCTCGCATATTAGTTAACAGAGTGTGGAATTCTGT10.49019607843137253No Hit
GCCAGCACGATCCAATCTCGCATAAAAGTTAACCACCAGAGACCGCCTTA10.49019607843137253No Hit
CAGCACGATCCAATCTCGCATACTACTTACCCACTGTTACAGTGGCCAGT10.49019607843137253No Hit
GCCAGCACGATCCAATCTCGCATAACACATAGACCCCAGCCTCCCGAACC10.49019607843137253No Hit
CAGCACGATCCAATCTCGCATAGTTCCTGCGTCACGGAAAGCATCCTCTC10.49019607843137253No Hit
CTTTTTGTTAACGTATTTAGCCACATAGAAACCATCAGCCATATAACTGG10.49019607843137253No Hit
CAGCACGATCCAATCTCGCATAAAAGATTAAACCACGAAAACCCTCACTC10.49019607843137253No Hit
CAGCACGATCCAATCTCGCATAGATTTATAGTACGACGAGCTGGCCGAAT10.49019607843137253No Hit
GCCAGCACGATCCAATCTCGCATACTAATAAGCGGCGAGAACATGGTGCG10.49019607843137253No Hit
ATCCAATCTCGCATATTATATATATCCAGCTCCTGGGACTCTAGGTGCTC10.49019607843137253No Hit
TGTGCCAGCACGATCCAATCTCGCATAGGAGAACACACTCTCAGCAGTAT10.49019607843137253No Hit
GCCAGCACGATCCTATCTTGCACAGGTCTTCTGCCATTCCTTATCTCGTA10.49019607843137253No Hit
TGTGCCAGCACGATCCAATCTCGCATAAAAGCTACCCGCAATGCTGGTGG10.49019607843137253No Hit
CAGTACGATCCAATCTCGCGTATTTAAATTCGGCGAGAACATGGTGCGCA10.49019607843137253No Hit
TGTGCCAGCACGATCCAATCTCGCATACATACTATCCTCGCAGTTTCCGC10.49019607843137253No Hit
TGTGCCAGCACGATCCAATCTCGCATAATAGCAGACAACAGCTGAGCAAG10.49019607843137253No Hit
GCCAGCACGATCCAATCTCGCATATAAATATGAACCACGAAAACCCTCAC10.49019607843137253No Hit
TAGCACGATCCAATCTCGCATAGTACTTCACGGCGAGAAATGGTGCGCAG10.49019607843137253No Hit
CAGCACGATCCAATCTCACATACAAAATGCCGGCGAGAACATGGTGCGCA10.49019607843137253No Hit
CCAGAGATCCAATCTCGCATAATATTTCCACACAATGCTGAAGGGCATCA10.49019607843137253No Hit
CAGCACGATCCAATCTCGCATATCTGAATGAGGAAGTATACCCAGGAGCA10.49019607843137253No Hit
GCACGATCCAATCTCGCATATGAACATAAGAGCCCCACCTGAGGGATGCG10.49019607843137253No Hit
GTGCCAGCACGATCCGATCTCGCATACCACCAGTGTTTCTTCTTTAATGA10.49019607843137253No Hit
TGTGCCAGCACGATCCAATCTCGCATACCTTCACCCGGCGAGAACATGGT10.49019607843137253No Hit
CAGCACGATCCAATCTCGCATACCTAAAAAGTGATGACCACCTCTCCTCC10.49019607843137253No Hit
TGTGCCAGCACGATCCAATCTCGCATATTTCCTTTAACCGCGAAAACCCT10.49019607843137253No Hit
CTCATATCTAAACCAGTCCTTGACGAACGTGCCAACCATATTAAGCCACT10.49019607843137253No Hit
CAGCACGATCCAATCTCGCATAGTTGAATCTGGGGTGGCCGTGACCGGTC10.49019607843137253No Hit
CAGCACGATCCAATCTCGCATACCTCATGCGGCTCTGCTGGTAACATCAC10.49019607843137253No Hit
GCCAGCACGATCCAATCACGCATACGAAGTATACCGCTGGAGAGTCGAGA10.49019607843137253No Hit
CAGCACGATCCAATCTCGCATAAATCCAGCCTACCTCTTTTTGGCCTAGG10.49019607843137253No Hit
TGTGCCAGCACGATCCAATCTCGCATACGACCTTACGGCGAGAACATGGT10.49019607843137253No Hit
TGTGCCAGCACGATCCAATCTCGCATAAGTTATGCTACCCCTCAGACCCC10.49019607843137253No Hit
GCACGATCCAATCTCGCATACATTAACTCTAGAGTCTTGGCCACTGATCT10.49019607843137253No Hit
CAGCACGATCCAATCTCGCATAGAACAATCAACCACGAAAACCCTCACTC10.49019607843137253No Hit
GCCAGCACGATCCAATCTCGCATACGAGCTCTCGGCGAGAACATGGTGCG10.49019607843137253No Hit
CAGCACGATCCAATCTCGCATAAGTGATCTACCTTCTGTCTCTGCTTCCT10.49019607843137253No Hit
CAGCACGATCCAATCTCGCATACCTAAATTTAGCGTAAGCAGAGCCAGTC10.49019607843137253No Hit
CAGCACGATGCAATCTCGCATATTTTCATGAGTGGCTGCAATAACACCAT10.49019607843137253No Hit
TGTGCCAGCACGATCCAATCTCGCATATCAGAAGCGAATGAAAATGACGG10.49019607843137253No Hit
GCACGATCCAATCTCGCATAGGAACAACCGGCGAGAACATGGTGCGCAGG10.49019607843137253No Hit
CAGCACGATCCAATCTCGCATATCAGGAAAAACCACGAAAACCCTCACTC10.49019607843137253No Hit
CAGCACGATCCAATCTCGCATAGGACGAAACGGCGAGAACATGGTGCGCA10.49019607843137253No Hit
TGTGCCAGCACGATCCAATCTCGCATATTACAATGTAGAATGACCTACAT10.49019607843137253No Hit
CAGCACGATCCAATCTCGCATACGATGACAGTGTTCATTGTTTCTGTGAG10.49019607843137253No Hit
CAGCACGATCCAATCTCGCATATATTCTCACGGCGAGAACATGGTGCGCA10.49019607843137253No Hit
GCCAGCACGATCCAATCTCGCATAGGAAGACCAACGCCAGTGCATCAAGT10.49019607843137253No Hit
CAGCACGATCCAATCTCGCATACGAGGAAACGGCGAGAACATGGTGCGCA10.49019607843137253No Hit
GCCAGCACGATCCAATCTCGCATAAGACTTGGCCGATGCAAATGATCCCA10.49019607843137253No Hit
TGTGCCAGCACGATCCAATCTCGCATACAACATGAAGAAAGCACTTCTTA10.49019607843137253No Hit
GCCAGCACGATCCAATCTCGCATACCACAACCCGGCGAGAACATGGTGCG10.49019607843137253No Hit
GCCAGCACGATCCAATCTCGCATATTTTTATTAACCACGAAAACCCTCAC10.49019607843137253No Hit
CAGCACGATCCAATCACGCATACCACGTGCTGGCGTCCGAGTCCATGGCC10.49019607843137253No Hit
TGTGCCAGCACGATCCAATCTCGCATACATGAATAAAGTATAGGCTTAAA10.49019607843137253No Hit
CAGCACGATCCAAACTCGCATAGAACGTATCCTTCAGGAGCTGCATCGCG10.49019607843137253No Hit
CAGCACGATCCAATCTCGCATACTCTAACGCTGCTGGAGGCGGGGGCGCT10.49019607843137253No Hit
TGTGCCAGCACGATCCAATCTCGCATACCTTCTCGCAGCGCGAACATGCT10.49019607843137253No Hit
CAGCACGATCCAATCTCGCATACATTGAACCCTGACACCTTGATGAGCAA10.49019607843137253No Hit
TGTGCCAGCACGATCCAATCTCGCATACGAAATTCCGGCGAGAACATGGT10.49019607843137253No Hit
CAGCACGATCCAATCTCGCATACTTTCTCAGTGACGGAGTTATAGTTGGT10.49019607843137253No Hit
TGTGCCAGCACGATCCAATCTCGCATAGAATGTACAACCACGAAAACCCT10.49019607843137253No Hit
GCCAGCACGATCCAATCTCGCGTACGAGATACAAGTATAGGCTTAAAAGC10.49019607843137253No Hit
GCACGATCCAATCTCGCATACTACGTTTGTGTCCCAGGATCGCAGAGGGC10.49019607843137253No Hit
GCACGATCCAATCTCGCATAACAAAATCCATCATGCCGAACAGGCTCCCA10.49019607843137253No Hit
TGTGCCAGCACGATCCAATCTCGCATAAAACAAATCTTTCCCCCTTTTTC10.49019607843137253No Hit
GTGCCAGCACGATCCAATCTCGCATACATATATACGGCGAGAACATGGTG10.49019607843137253No Hit
CAGCACGATCCAATCTCGCATACATCAACACCACCAGAGACCGCCTTACC10.49019607843137253No Hit
CAGCACGATCCAATCTCGCATAGTAAATGCTGAAGTTGAAGCTGTGGTCA10.49019607843137253No Hit
GTGCCAGCACGATCCAATCTCGCATAATAGCTGATGGGCTCTGTGGTGGT10.49019607843137253No Hit
GCCAGCACGATCCAATCTCGCATACGAACACATTGTTCACGCTGGGCAGT10.49019607843137253No Hit
CAGCACGATCCAATCTCGCATATATATTCGTGGTGGGCAGCCCAGACACC10.49019607843137253No Hit
CAGCACGATCCAATCTCGCATATTAGTATTAACCACGAAAACCCTCACTC10.49019607843137253No Hit
CAGCACGATCCAATCTCGCATACTTAATAACAACAGCTGAGCAAGAGGCC10.49019607843137253No Hit
TGTGCCAGCACGATCCAATCTCGCATAATTTCACGCCGCACCTTCTCCCT10.49019607843137253No Hit
GCCAGCACGATCCAATCTCGCATACGAAAACCCGGCGAGAACATGGTGCG10.49019607843137253No Hit
GGTGCTAGCAAGATAAAAGGTAGCAGACGGGATAAAGATAGAGGAGGGAG10.49019607843137253No Hit
TGTGCCAGCACGATCCAATCTCGCATATTTAATTGAGGTCTTCCCCTCAT10.49019607843137253No Hit
CAGCACGATCCAATCTCGCATACCTCCTAGCGGCGAGAACATGGTGCGCA10.49019607843137253No Hit
CAGCACGATCCAATCTCGCATAGCTTCAACTGGCTTACTTGAGAGTCGAC10.49019607843137253No Hit
CAGCACGATCCAATCTCGCATATCTGGTATCGGCGAGAACATGGTGCGCA10.49019607843137253No Hit
GCCAGCACGATCCAATCTCGCATATATGCATCTCGCCAAGGCCAAGTGAG10.49019607843137253No Hit
CAGCACGATCCAATCTCGCATATATGAAACAGCCTTTGTCCTGGCTCCTT10.49019607843137253No Hit
CAGCACGATCCAATCTCGCATATCATCAGGTGCAGCTGTCGCTCGCTCGT10.49019607843137253No Hit
GCCAGCACGATCCAATCTCGCATATAACTTACCAGCAATCAGCTGGTCAA10.49019607843137253No Hit
GCCAGCACGATCCAATCTCGCATAATATCAACACCTCAGAACGTACCATA10.49019607843137253No Hit
CAGCACGATCCAATCTCGCATACGTTCTTACGGCGAGAACATGGTGCGCA10.49019607843137253No Hit
GCCAGCACGATCCAATCTCGCATATGTCTAGGGAGTTCTTTGATCTGGAA10.49019607843137253No Hit
CAGCACGATCCAATCTCGCATAAGTTAAGTCGGCGAGAACATGGTGCGCA10.49019607843137253No Hit
GCCAGCACGATCCAATCTCGCATACAATGATTCCTTTGCTTTCATCCTTA10.49019607843137253No Hit
GCCAGCACGATCCAATCTCGCATACGTTGAAGGGACCATGGGTTCCTGCT10.49019607843137253No Hit
TGTGCCAGCACGATCCAATCTCGCATACATCAAATCGGCGAGAACATGGT10.49019607843137253No Hit
GCCAGCACGATCCAATCTCGCATAAATACAAATGCAGAAGTACCTTTAGC10.49019607843137253No Hit
CAGCACGATCCAATCTCGCATACCTTGTGGCGGCGAGAACATGGTGCGCA10.49019607843137253No Hit
TGCGCCAGCACGATCCAATCTCGCATATCTTGACAGGGCAGCAGACACAG10.49019607843137253No Hit
CAGCACGATCCAATCTCGTATATAATAAAGAACCACGAAAACCCTCACTC10.49019607843137253No Hit
GCCAGCACGATCCAATCTCGCATAACAAAAATGTACCCACAGCAGCCCGC10.49019607843137253No Hit
AAGCACGATCCAATCTCGCATACTAACTCCCGGCGGGAACATGGTGCGCA10.49019607843137253No Hit
CAGCACGATCCAATCTCGCATAGATAGTGCCAGTTCATTTGATAAGAACT10.49019607843137253No Hit
GCCAGCACGATCCAATCTCGCATACGACCTGTACACAATGCTGAAGGGCA10.49019607843137253No Hit
CAGCACGATCCAATCTCGCATAACTCAACATTCCTCTTCACTCTCTCCAC10.49019607843137253No Hit
CAGCACGATCCAATCTCGCATACCAATTAAAACCACGAAAACCCTCACTC10.49019607843137253No Hit
CAGCACGATCCAATCTCGCATATCATTACCCGACATACTTCAGGGCATCA10.49019607843137253No Hit
GGCCAGCACGATCCAATCTCGCATATCTTCTGTCTGCTCAAGGCCCGTTG10.49019607843137253No Hit
GTGCCAGCACGATCCAATCTCGCATACGACATGTCCACAGCAAGATGGAT10.49019607843137253No Hit
TGTGCCAGCACGATCCAATCTCGCATATAAACGACTGATCTGGCCACGGC10.49019607843137253No Hit
GCACGATCCAATCTCGCATACATCTAGTAAGCTGTTACTAAGGGAGAGCC10.49019607843137253No Hit
CAGCACGATCCAATCTCGCATAAAACATACGGCCACTGGCTCCACCAGCG10.49019607843137253No Hit
GTGCCAGCACGATCCAATCTCGCATAACTCCACACAAAGGAACACTGACA10.49019607843137253No Hit
CAGCACGATCCAATCTCGCATACTTGCTACCGGCGAGAACATGGTGCGCA10.49019607843137253No Hit
CAGCACGATCCAATCTCGCATAGAAACAGATGGCCCCTGTCATCTTCTGT10.49019607843137253No Hit
GCCAGCACGATCCAATCTCGCACAGATACTTGCTCATCTTGGAAGTCTAT10.49019607843137253No Hit
CAGCACGATCCAATCTCGCATATAAATAACCGGCGAGAACATGGTGCGCA10.49019607843137253No Hit
CAGCACGATCCAATCTCGCATACATCCAGCGCTGCCTTGGTCCCTGTGGG10.49019607843137253No Hit
TGTGCCAGCACGATCCAATCTCGCATAACACAAACCGCCGAGAACATCGT10.49019607843137253No Hit
TGTGCCAGCACGATCCAATCTCGCATAACTACTTCCCCACCAGGCTGGCC10.49019607843137253No Hit
TGTGCCAGCACGATCCAATCTCGCATAACACAAGACAAAGGTGTGTGTCC10.49019607843137253No Hit
TGTGCCAGCACGATCCAATCTCGCATATAACCTTGCTGGCAAAACGTTTG10.49019607843137253No Hit
GTGCCAGCACGATCCAATCTCGCATAGGATTACTCAAAGGAACACTGACA10.49019607843137253No Hit
TGTGCCAGCACGATCCAATCTCGCATACCTCAAAACGGCGAGAACATGGC10.49019607843137253No Hit
GCCAGCACGATCCAATCTCGCATATCAAATCCCGGCGAGAACATGGTGCG10.49019607843137253No Hit
GCCAGCACGATCCAATCTCGCATAATACGTGTCCTGGCTCCTTCCCAGCC10.49019607843137253No Hit
CAGCACGATCCAATCTCGCATAAAAATTTTAACCACGAAAACCCTCACTC10.49019607843137253No Hit
TGTGCCAGCACGATCCAATCTCGCATACTTTATAACAGCTAGAGGATCTT10.49019607843137253No Hit
AGAGCCATACCGCTGAACCGCTCTTCAGATCGGAAGAGCGGTTCAGCAGG10.49019607843137253Illumina Paired End PCR Primer 2 (100% over 24bp)
GTGCCAGCACGATCCAATCTCGCATACATGCTCTCGGCGAGAACATGGTG10.49019607843137253No Hit
TGTGCCAGCACGATCCAATCTCGCATAATTTTTAAAGGCGAGAAAATGGT10.49019607843137253No Hit
GCCAGCACGATCCAATCTCGCATAACTAATCCGTGGACATCTTTGGCATC10.49019607843137253No Hit
GCCAGCACGATCCAATCTCGCATATCAGATCGCGGGAGAACATGGTGCGC10.49019607843137253No Hit
CAGCACGACCCAATCTCGCATACGTTGAACCGGCGAGAACATGGTGCGCA10.49019607843137253No Hit
CAGCACGATCCAATCTCGCATAGTAAGTTCGCTGGGACGCGACTGCGCTC10.49019607843137253No Hit
GCCAGCACGATCCAATCTCGCATATAACGTAAGAACAGATGCTGAGCTTG10.49019607843137253No Hit
CAGCACGATCCAATCTCGCATAAAACTGCGCTGCTGGAGGCGGGGGCGCT10.49019607843137253No Hit
CAGCACGATCCAATCTCGCATACGATGACCCAAGTTCTTCATCAGCTGTA10.49019607843137253No Hit
GTGCCAGCACGATCCAATCTCGCATAAATGCTAATAGGAGTAGGCAATGG10.49019607843137253No Hit
CAGCACGATCCAATCTCGCATATTTCCTCGAGCTTACCTTAGGACATGTG10.49019607843137253No Hit
TGTGCCAGCACGATCCAATCTCGCATATAATATATACTCACCTGCGACTT10.49019607843137253No Hit
CAGCACGATCCAATCTCGCATAGTTTTTACCCCGGGTGGTCGGCAGCACC10.49019607843137253No Hit
CAGCACGATCCAATCTCGCATACATCAAACAAGTATAGGCTTAAAAGCTT10.49019607843137253No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)