FastQCFastQC Report
Sun 11 Jun 2023
EGAF00008066501

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008066501
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences473065
Sequences flagged as poor quality0
Sequence length100
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TACGTGCCAGCACGATCCAATCTCGCATAACTTGTATCATGAGTAGGACA7810.16509359178971178No Hit
TACGTGCCAGCACGATCCAATCTCGCATAACTTGTATCATGAGTCCTGAA6480.1369790620739222No Hit
TACGTGCCAGCACGATCCAATCTCGCATAACTTGTATCATGAGTTCTAGT6440.13613351230803378No Hit
TACGTGCCAGCACGATCCAATCTCGCATAACTTGTATCATGAGTACAAGC5680.12006806675615402No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)