FastQCFastQC Report
Sun 11 Jun 2023
EGAF00008066520

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008066520
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences282294
Sequences flagged as poor quality0
Sequence length100
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTGCCAGCACGCGGCTGAGCTCCCGCAGGAAGTTATCTCGTATGCCGTC13280.47043153591645587No Hit
CGTGCCAGCACGATCCTGAAATTCTGTTAACGAATCCTTCTCTTTATCTC4340.15374042664739596No Hit
CGTGCCAGCACGATCCAATCTCGCATAACTTGTATCATGAGTAGGACACT3790.13425719285567528No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)