FastQCFastQC Report
Sun 11 Jun 2023
EGAF00008066523

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008066523
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences456805
Sequences flagged as poor quality0
Sequence length100
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTGCCAGCACGCGGCTGAGCTCCCGCAGGAAGTTATCTCGTATGCCGTC55021.2044526657983166No Hit
CGTGCCAGCACGATCCTGAAATTCTGTTAACGAATCCTTCTCTTTATCTC15270.3342783025579843No Hit
CGTGCCAGCACGATCCAATCTCGCATAACTTGTATCATGAGTAGGACACT5490.12018257243243835No Hit
CGTGCCAGCACGATCCAATCTCGCATAACTTGTATCATGAGTTCTAGTTG5210.1140530423265945No Hit
CGTGCCAGCACGATCCAATCTCGCATAACTTGTATCATGAGTCCTGAATC4900.10726677685226738No Hit
CGTGCCAGCACGATCCAATCTCGCATAACTTGTATCATGAGTACAAGCTC4700.10288854106237891No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)