FastQCFastQC Report
Sun 11 Jun 2023
EGAF00008066575

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008066575
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences572724
Sequences flagged as poor quality0
Sequence length100
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTGCCAGCACGCGGCTGAGCTCCCGCAGGAAGTTATCTCGTATGCCGTC18490.3228431146590679No Hit
CGTGCCAGCACGATCCAATCTCGCATAACTTGTATCATGAGTAGGACACT7600.13269917097938974No Hit
CGTGCCAGCACGATCCAATCTCGCATAACTTGTATCATGAGTCCTGAATC6490.11331810784950516No Hit
CGTGCCAGCACGATCCAATCTCGCATAACTTGTATCATGAGTTCTAGTTG6470.11296889950482257No Hit
CGTGCCAGCACGATCCAATCTCGCATAACTTGTATCATGAGTACAAGCTC5830.10179423247497921No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)