FastQCFastQC Report
Sun 11 Jun 2023
EGAF00008066594

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008066594
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences114
Sequences flagged as poor quality0
Sequence length105
%GC50

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTATCGGTAGCAAGCACATCACCTTGAATGCCACCGGAGGCGGCTTTTTG1614.035087719298245No Hit
TTAACAGTCGGGAGAGGAGTGGCATTAACACCATCCTTCATGAACTTAAT119.649122807017543No Hit
ATGTGCCAGCACGATCCAATCTCGCATAACTCTAACCTTACCGGGCAGTT21.7543859649122806No Hit
ATGTGCCAGCACGATCCAATCTCGCATAACATGAGGGGTCTGGAAGGCTG10.8771929824561403No Hit
TTATCGGTAGCAAGCACATCACCCCGAATGCCACCGGAGGCGGCTTCTTG10.8771929824561403No Hit
ATGTGCCAGCACGATCCAATCTCGCATAATAGTATGCGGCGAGAACATGG10.8771929824561403No Hit
CTGTGCCAGCACGATCCAATCTCGCATAATTTATACGACTCGGGCGGGCC10.8771929824561403No Hit
CTGTGCCAGCACGATCCAATCTCGCATATGTTGACCTTTCTCTCTTTCCT10.8771929824561403No Hit
CTGTGCCAGCACGATCCAATCTCGCATAGCTTCTGCTCAGGAGTTGTCAA10.8771929824561403No Hit
CTGTGCCAGCACGATCCAATCTCGCATATGAGGTGACCAGCAGCAGGACC10.8771929824561403No Hit
ATGTGCCAGCACGATCCAATCTCGCATATAACATCCAGCCACTGGCTCCA10.8771929824561403No Hit
ATGTGCCAGCACGATCCAATCTCGCATACCATTTCTTGAACATATGTATC10.8771929824561403No Hit
CTGTGCCAGCACGATCCAATCTCGCATAGGTCTTCTGCCATTTCTTATCT10.8771929824561403No Hit
ATGTGCCAGCACGATCCAATCTCGCATAGATTCAACAACCACGAAAACCC10.8771929824561403No Hit
CTGTGCCAGCACGATCCAATCTCGCATACTAACAGGACCTTCTACCAAGA10.8771929824561403No Hit
ACGTGCCAGCACGATCCAATCTCGCATAGATATACTCGGCGAGAACATGG10.8771929824561403No Hit
ATGTGCCAGCACGATCCAATCTCGCATAGCTGAACCTTTCTGCCACGACT10.8771929824561403No Hit
CTGTGCCAGCACGATCCAATCTCGCATAATACTAGCCGGCGAGAACATGG10.8771929824561403No Hit
ATGTGCCAGCACGATCCAATCTCGTATACCAGCAGCAACCACGAAAACCC10.8771929824561403No Hit
CTGTGCCAGCACGATCCAATTTCGCATAATTTGAATCGGCGAGAACATGG10.8771929824561403No Hit
TGCCAGCACGTCCCTGGCACTCAGGCATTATCTCGTATGCCGTCTTCTGC10.8771929824561403Illumina PCR Primer Index 6 (96% over 25bp)
CTGTGCCAGCACGATCCAATCTCGCATAATTCTTTATCTGGTGAATGCAA10.8771929824561403No Hit
CTGTGCCAGCACGATCCAATCTCGCATAAATCATCATTCACACTTCCCGC10.8771929824561403No Hit
ATGTGCCAGCACGATCCAATCTCGCATAAAAGAACTCATATTGTTGGCAG10.8771929824561403No Hit
CTGTGCCAGCACGATCCAATCTCGCATACTTCCAAGTACACTCACCACAC10.8771929824561403No Hit
ATGTGCCAGCACGATCCAATCTCGCATAACTTATCGCGGCGAGAACATGG10.8771929824561403No Hit
GGATGGCAGGGTCAAATGGTATTTTTAGTTCTAGATCTCTGAGGAATCGC10.8771929824561403No Hit
ATGTGCCAGCACGATCCAATCTCGCATACAAGATTAGCCTCCCTGCTCCC10.8771929824561403No Hit
ATGTGCCAGCACGATCCAATCTCGCATAACACCATAAGAGTCCAGACTCT10.8771929824561403No Hit
ATGTGCCAGCACGATCCAATCTCGCATACCACGTACCGGCGAGAACATGG10.8771929824561403No Hit
CTGTGCCAGCACGATCCAATCTCGCATGACTTGTATCATGAGTACAAGCT10.8771929824561403No Hit
ATGTGCCAGCACGATCCAATCTCGCATATTATGAAACATCATTGTTAGTT10.8771929824561403No Hit
ATGTGCCAGCACGATCCAATCTCGCATAACATTTGAACCTTCTGTCTCTG10.8771929824561403No Hit
ATGTGCCAGCACGATCCAATCTCGCATACCAATAGTGAGACAGAGACCAT10.8771929824561403No Hit
TTATCGGTAGCAAGCACATCACCTTTAATGCCACCGGAGGCGGCTTTTTG10.8771929824561403No Hit
TTATCGGTAGCAAGCACATCACCTAGAATGCCACCGGAGGCGGCTTTTTG10.8771929824561403No Hit
TTATCGGTAGCAAGCACATCACCTCGAATGCCACCGGAGGCGGCTTTTTG10.8771929824561403No Hit
CTGTGCCAGCACGATCCAATCTCGCATATAATCTCCCGGCGAGAACATGG10.8771929824561403No Hit
ATGTGCCAGCACGATCCAATCTCGCATACTACGTTAGGTGGATGCTGATG10.8771929824561403No Hit
CTGTGCCAGCACGATCCAATCTCGCATAATAATTCAGTTTCCATTAAGTT10.8771929824561403No Hit
ATGTGCCAGCACGATCCAATCTCGCATAGCTGCTCTGAATTAGTCTCCGA10.8771929824561403No Hit
ATGTGCCAGCACGATCCAATCTCGCATAGAAATAAAACATCCCAACTCCT10.8771929824561403No Hit
ATGTGCCAGCACGATCCAATCTCGCATACTAGCATGCCGTTCTCCTGGGA10.8771929824561403No Hit
ATGTGCCAGCACGATCCAATCTCGCATACTACTACGGAAGAAGCCAGCTA10.8771929824561403No Hit
ATGTGCCAGCACGATCCAATCTCGCATAGTACGAGACGGCGAGAACATGG10.8771929824561403No Hit
TGCCAGCACGATCCAATCTCGCATAGAATGAAGCGGCGAGAACATGGTGC10.8771929824561403No Hit
TGCCAGCACGATCCAATCTCGCATACGTCGACGATCTTTGGTGTGATGTC10.8771929824561403No Hit
TGCCAGCACGATCCAATCTCGCATAGAATTACGAACCACGAAAACCCTCA10.8771929824561403No Hit
ATGTGCCAGCACGATCCAATCTCGCATATTTATACAGATGGACTGAAAGT10.8771929824561403No Hit
CTGTGCCAGCACGATCCAATCTCGCATATAAAGTCGAACCACGAAAACCC10.8771929824561403No Hit
ATGTGCCAGCACGATCCAATCTCGCATATAAAGACCAACCACGAAAACCC10.8771929824561403No Hit
CTGTGCCAGCACGATCCAATCTCGCATAAGTCATTGCGGCGAGAACATGG10.8771929824561403No Hit
ATGTGCCAGCACGATCCAATCTCGCATAGAACCAACCGGCGAGAACATGA10.8771929824561403No Hit
TGCCAGCACGATCCAATCTCGCATACTTGCAGCTTCCTTACCGAGTAGGA10.8771929824561403No Hit
ATGTGCCAGCACGATCCAATCTCGCATATATCCTTCCGGCGAGAACATGG10.8771929824561403No Hit
CTGTGCCAGCACGATCCAATCTCACATAGCTCTACCTGGCACCAGAGGTG10.8771929824561403No Hit
CTGTGCCAGCACGATCCAATCTCGCATAGGTAGAATTTCAAAGGTCTTGC10.8771929824561403No Hit
ATGTGCCAGCACGATCCAATCTCGCATAGCAACTCGACTCGGCAGGCGTC10.8771929824561403No Hit
CTGTGCCAGCACGATCCAATCTCGCATAGCTTATTAGTCCTCAAGGGCCA10.8771929824561403No Hit
CTGTGCCAGCACGATCCAATCTCGCATATAATGTACCGGCGAGAACATGG10.8771929824561403No Hit
CTGTGCCAGCACGATCCAATCTCGCATACGTTGAGCCCAGGACCACCTTT10.8771929824561403No Hit
ATGTGCCAGCACGATCCAATCTCGCATGGAATGTACCGGCGAGAACATGG10.8771929824561403No Hit
CTGTGCCAGCACGATCCAATCTCGCATAAGATTATGCGGCGAGAACATGG10.8771929824561403No Hit
ATGTGCCAGCACGATCCAATCTCGCATAGGATAACATACACTCACCACAC10.8771929824561403No Hit
CTGTGCCAGCACGATCCAATCTCGCATACTTAAAGCCGGCGAGAACATGG10.8771929824561403No Hit
ATGTGCCAGCACGATCCAATCTCGCATATAAGTTAATCGCATGTACTCTG10.8771929824561403No Hit
CTGTGCCAGCACGATCCAATCTCGCATAACTGCAGACGGCGAGAACATAG10.8771929824561403No Hit
TTAACAGTCGGGAGAGGAGTGGCACTAACACCATCCTTCATGAACTTAAT10.8771929824561403No Hit
ATGTGCCAGCACGATCCAATCTCGCATAGAGATCCCGGCGAGAACATGGT10.8771929824561403No Hit
ATGTGCCAGCACGACCCAATCTCGCATAGGTATAAATGGCAATGCATTGA10.8771929824561403No Hit
ATGTGCCAGCACGATCCAATCTCGCATAGTTCCATGCGGCGAGAACATGG10.8771929824561403No Hit
ATGTGCCAGCACGATCCAATTTCGCATACCTCCACGTCACAAGATGATGT10.8771929824561403No Hit
CTGTGCCAGCACGATCCTATCTTGCACAGGTCTTCTGCCATTTCTTATCT10.8771929824561403No Hit
CTGTGCCAGCACGATCCAATCTCGCATACCTATTAGCTCTTCCCGGGTCC10.8771929824561403No Hit
CTGTGCCAGCACGATCCAATCTCGCATAGCATAACAGGAGAAGTGCAGGC10.8771929824561403No Hit
CTGTGCCAGCACGATCCAATCTCGCATAGTACCAGCGGTGGTTGAAGGAA10.8771929824561403No Hit
ATGTGCCAGCACGATCCAATCTCGCATAATTGGAAGCTTGCTCAGTGTGG10.8771929824561403No Hit
ATGTGCCAGCACGATCCAATCTCGCATAATTCTTCCCGGCGAGAACATGG10.8771929824561403No Hit
CTGTGCCAGCACGATCCAATCTCGCATAAGTTCTATAACCACGAAAACCC10.8771929824561403No Hit
CTGTGCCAGCACGATCCAATCTCGCATATGATTACAGTGTCCCAGGATCG10.8771929824561403No Hit
ATGTGCCAGCACGATCCAATCTCGCATATGACGTGTCGACCCTGTCCCTC10.8771929824561403No Hit
TTATCGGTAGCAAGCACATCACCCTGAATGCCACCGGAGGCGGCTTTTTG10.8771929824561403No Hit
CTGTGCCAGCACGATCCAATCTCGCATAGCACGAAGGAATCAGCTGGTTC10.8771929824561403No Hit
CCAGCACGATCCAATCTCGCATATTAATATACGGCGAGAACATGGTGCGC10.8771929824561403No Hit
CTGTGCCAGCACGATCCAATCTCGCATATCAGGAGTTCCATTGCACTGCT10.8771929824561403No Hit
ATGTGCCAGCACGATCCAATCTCGCATAAATCCTATAAGCATTTGAGAGT10.8771929824561403No Hit
ATGTGCCAGCACGATCCAATCTCGCACATCTTTTGCTGGCCTCATCGGCC10.8771929824561403No Hit
ATGTGCCAGCACGATCCAATCTCGCATAGCACCTATAAGCATTTGAGAGT10.8771929824561403No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)