FastQCFastQC Report
Sun 11 Jun 2023
EGAF00008066596

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008066596
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1668
Sequences flagged as poor quality0
Sequence length105
%GC50

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGGTCAACGCTACCTGTAGGAAGTGTCCGCATAAAGTGCACCGCATGGA342.038369304556355No Hit
ACCCCAAAAAGAAAGGTATTAAGGATGAGTGTTCAAGATTGCTGGAGGCC191.1390887290167866No Hit
GCCACAAGCCTCAATAGCAGGTTTAAGAGCCTCGATACGCTCAAAGTCAA130.7793764988009593No Hit
AGGGTCAACGCTACCTGTAGGAAGCGTCCGCATAAAGTGCACCGCATGGA30.1798561151079137No Hit
TGTGCCAGCACGATCCAATCTCGCATAACTTGTATCATGAGTGCTTCTTC30.1798561151079137No Hit
TGTGCCAGCACGATCCAATCTCGCATAACTCCACACCGTGCCCTGGAAGT20.1199040767386091No Hit
TGTGCCAGCACGATCCAATCTCGCATAACTTGTATCATGAGTATTCAGCT20.1199040767386091No Hit
TGTGCCAGCACGATCCAATCTCGCATAACTTGTATCATGAGTACCATTTG20.1199040767386091No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)