FastQCFastQC Report
Sun 11 Jun 2023
EGAF00008066603

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008066603
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences113
Sequences flagged as poor quality0
Sequence length105
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTTTGTTAACGTATTTAGCCACATAGAAACCAACAGCCATATAACTGGT3026.548672566371685No Hit
TGGAGACAAATAATCTCTTTAATAACCTGATTCAGCGAAACCAATCCGCG2824.778761061946902No Hit
GGCGATTGCGTACCCGACGACCAAAATTAGGGTCAACGCTACCTGTAGGA2118.58407079646018No Hit
TGGAAACACTGGTCATAATCATGGTGGCGAATAAGTACGCGTTCTTGCAA1513.274336283185843No Hit
GTGATTTATGTTTGGTGCTATTGCTGGCGGTATTGCTTCTGCTCTTGCTG119.734513274336283No Hit
TGGAAACACTGGTCATAATCATGGTTGCGAATAAGTACGCGTTCTTGCAA10.8849557522123894No Hit
TTTTTGTTAACGTATTTAGCCACATTGAATCCTTCAGCCTTTTTTCTTTT10.8849557522123894No Hit
TGGAAACACTGGTCATAATCATGGTGGCGAATAAGTACGCGTTCTTGCCA10.8849557522123894No Hit
GTGATTTATGTTTGGTGCTATTGCTGGCGGTATTGTTTCTGCTCTTGCTG10.8849557522123894No Hit
TTTTTGTTAACGTATTTAGCCACATATAAACCAACAGCCATATAACTGGT10.8849557522123894No Hit
TTTTTGTTAACGTATTTAGCCACACAGAAACCAACAGCCATATAACTGGT10.8849557522123894No Hit
TGTAGACAAATAATCTCTTTAATAACCTGATTCAGCGAAACCAATCCGCG10.8849557522123894No Hit
TGTGCCAGCACGATCCAATCTCTCCTCCTCCCCCTCTTCCCCCTTCTTTC10.8849557522123894No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)