FastQCFastQC Report
Thu 29 Jun 2023
EGAF00008071363

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008071363
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences26235996
Sequences flagged as poor quality0
Sequence length101
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGTGAATATATCTCGTAT610900.2328480306217458TruSeq Adapter, Index 19 (97% over 38bp)
CTTTATTATTCTGCAGGTACATGTCCAGGGGCCCAGCCTCTGGGCCCAGT351980.1341591910594894No Hit
ATGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG300510.11454110604377285No Hit
CACACACACACACACACACACACACACACACACACACACACACACACACA296060.11284496308049444No Hit
CTTTATTTGGCCCCAGCCCCTAGCCCCACAGCCAAGACAGTTTGACATAA282080.10751640608574571No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)