FastQCFastQC Report
Thu 29 Jun 2023
EGAF00008071370

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008071370
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences25098179
Sequences flagged as poor quality0
Sequence length101
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTTATTATTCTGCAGGTACATGTCCAGGGGCCCAGCCTCTGGGCCCAGT410720.1636453385721729No Hit
CTTTATTTGGCCCCAGCCCCTAGCCCCACAGCCAAGACAGTTTGACATAA319250.12720046342804392No Hit
CACACACACACACACACACACACACACACACACACACACACACACACACA306010.12192518030889811No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)