FastQCFastQC Report
Sun 11 Jun 2023
EGAF00008071378

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008071378
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22918439
Sequences flagged as poor quality0
Sequence length101
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGTGAATATATCTCGTAT489980.21379292018972149TruSeq Adapter, Index 19 (97% over 38bp)
CTTTATTATTCTGCAGGTACATGTCCAGGGGCCCAGCCTCTGGGCCCAGT296270.12927145692601488No Hit
CACACACACACACACACACACACACACACACACACACACACACACACACA247350.1079261986385722No Hit
CTTTATTTGGCCCCAGCCCCTAGCCCCACAGCCAAGACAGTTTGACATAA230930.10076166182173228No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)