FastQCFastQC Report
Thu 9 May 2024
EGAF00008072564

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008072564
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3428269
Total Bases257.1 Mbp
Sequences flagged as poor quality0
Sequence length75
%GC51

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGACAGGCTGCATCAGAAGAGGCCATCAAGCAGATCACTGTCCTTCTGCC287050.8373030237708884No Hit
AGGACAGGCTGCATCAGAAGAGGCCATCAAGCAGATCACTGTCCTTCTGC199170.5809637458437479No Hit
GCTGCATCAGAAGAGGCCATCAAGCAGATCACTGTCCTTCTGCCATGGCC157360.4590071549227905No Hit
GGCTGCATCAGAAGAGGCCATCAAGCAGATCACTGTCCTTCTGCCATGGC150830.4399596414400387No Hit
CTGCATCAGAAGAGGCCATCAAGCAGATCACTGTCCTTCTGCCATGGCCC104970.30618950846622595No Hit
CCAACACCTGTGCGGCTCACACCTGGTGGAAGCTCTCTACCTAGTGTGCG93900.27389916018842164No Hit
CAGGCTGCATCAGAAGAGGCCATCAAGCAGATCACTGTCCTTCTGCCATG72420.21124363344883382No Hit
CCTGTGGATGCGCCTCCTGCCCCTGCTGGCGCTGCTGGCCCTCTGGGGAC69270.20205532296327972No Hit
CTCACACCTGGTGGAAGCTCTCTACCTAGTGTGCGGGGAACGAGGCTTCT60890.17761150014774219No Hit
GAGGCCATCAAGCAGATCACTGTCCTTCTGCCATGGCCCTGTGGATGCGC58720.17128177514658272No Hit
GCTTCTTCTACACACCCAAGACCCGCCGGGAGGCAGAGGACCTGCAGGTG44760.13056151661377796No Hit
GGCTTCTTCTACACACCCAAGACCCGCCGGGAGGCAGAGGACCTGCAGGT44560.12997813182104437No Hit
AGCAGATCACTGTCCTTCTGCCATGGCCCTGTGGATGCGCCTCCTGCCCC41620.12140237536786057No Hit
AAGCTCTCTACCTAGTGTGCGGGGAACGAGGCTTCTTCTACACACCCAAG40770.1189229899987428No Hit
TGTGGATGCGCCTCCTGCCCCTGCTGGCGCTGCTGGCCCTCTGGGGACCT39080.11399338850014394No Hit
GCCCTGTGGATGCGCCTCCTGCCCCTGCTGGCGCTGCTGGCCCTCTGGGG38180.11136815693284277No Hit
CAAGCAGATCACTGTCCTTCTGCCATGGCCCTGTGGATGCGCCTCCTGCC36970.10783867893680454No Hit
CAGAGGACCTGCAGGTGGGGCAGGTGGAGCTGGGCGGGGGCCCTGGTGCA36530.10655523239279065No Hit
GGGGACCTGACCCAGCCGCAGCCTTTGTGAACCAACACCTGTGCGGCTCA36200.10559264748478021No Hit
GCTCTCTACCTAGTGTGCGGGGAACGAGGCTTCTTCTACACACCCAAGAC35410.10328827755348254No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)