FastQCFastQC Report
Thu 9 May 2024
EGAF00008072576

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008072576
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3341350
Total Bases250.6 Mbp
Sequences flagged as poor quality0
Sequence length75
%GC51

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGACAGGCTGCATCAGAAGAGGCCATCAAGCAGATCACTGTCCTTCTGCC277950.8318494021877385No Hit
AGGACAGGCTGCATCAGAAGAGGCCATCAAGCAGATCACTGTCCTTCTGC193190.5781794783545573No Hit
GCTGCATCAGAAGAGGCCATCAAGCAGATCACTGTCCTTCTGCCATGGCC150910.45164379666901106No Hit
GGCTGCATCAGAAGAGGCCATCAAGCAGATCACTGTCCTTCTGCCATGGC145270.43476439163811037No Hit
CTGCATCAGAAGAGGCCATCAAGCAGATCACTGTCCTTCTGCCATGGCCC100200.29987879150642704No Hit
CCAACACCTGTGCGGCTCACACCTGGTGGAAGCTCTCTACCTAGTGTGCG90560.27102817723375283No Hit
CAGGCTGCATCAGAAGAGGCCATCAAGCAGATCACTGTCCTTCTGCCATG70460.21087285079384083No Hit
CCTGTGGATGCGCCTCCTGCCCCTGCTGGCGCTGCTGGCCCTCTGGGGAC64640.1934547413470603No Hit
CTCACACCTGGTGGAAGCTCTCTACCTAGTGTGCGGGGAACGAGGCTTCT58260.17436066260643154No Hit
GAGGCCATCAAGCAGATCACTGTCCTTCTGCCATGGCCCTGTGGATGCGC57150.17103865204183938No Hit
GGCTTCTTCTACACACCCAAGACCCGCCGGGAGGCAGAGGACCTGCAGGT43510.13021682852739164No Hit
GCTTCTTCTACACACCCAAGACCCGCCGGGAGGCAGAGGACCTGCAGGTG42390.12686488993969505No Hit
AAGCTCTCTACCTAGTGTGCGGGGAACGAGGCTTCTTCTACACACCCAAG40650.12165741391952355No Hit
AGCAGATCACTGTCCTTCTGCCATGGCCCTGTGGATGCGCCTCCTGCCCC39830.11920331602495997No Hit
TGTGGATGCGCCTCCTGCCCCTGCTGGCGCTGCTGGCCCTCTGGGGACCT38350.11477396860550378No Hit
GCCCTGTGGATGCGCCTCCTGCCCCTGCTGGCGCTGCTGGCCCTCTGGGG37640.11264907896508895No Hit
CAAGCAGATCACTGTCCTTCTGCCATGGCCCTGTGGATGCGCCTCCTGCC36040.10786059526837954No Hit
GGGGACCTGACCCAGCCGCAGCCTTTGTGAACCAACACCTGTGCGGCTCA35580.10648390620557559No Hit
CAGAGGACCTGCAGGTGGGGCAGGTGGAGCTGGGCGGGGGCCCTGGTGCA34930.1045385847037874No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)