FastQCFastQC Report
Wed 8 May 2024
EGAF00008072581

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008072581
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3252367
Total Bases243.9 Mbp
Sequences flagged as poor quality0
Sequence length75
%GC51

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTAGAAGAAGCCTCGTTCCCCGCACACTAGGTAGAGAGCTTCCACCAGGT83950.25811970174337645No Hit
GCCACGCTTCTGCAGGGACCCCTCCAGGGCCAAGGGCTGCAGGCTGCCTG78410.24108595370694635No Hit
GCTGGTTCAAGGGCTTTATTCCATCTCTCTCGGTGCAGGAGGCGGCGGGT74670.22958663644047553No Hit
GGGCTGCAGGCTGCCTGCACCAGGGCCCCCGCCCAGCTCCACCTGCCCCA73930.22731137045727004No Hit
CCGCACACTAGGTAGAGAGCTTCCACCAGGTGTGAGCCGCACAGGTGTTG70380.21639624310540598No Hit
CCACGCTTCTGCAGGGACCCCTCCAGGGCCAAGGGCTGCAGGCTGCCTGC67550.20769488806152564No Hit
CACGCTTCTGCAGGGACCCCTCCAGGGCCAAGGGCTGCAGGCTGCCTGCA59270.18223650651971318No Hit
GAAGAAGCCTCGTTCCCCGCACACTAGGTAGAGAGCTTCCACCAGGTGTG57800.17771672139091313No Hit
AGAAGAAGCCTCGTTCCCCGCACACTAGGTAGAGAGCTTCCACCAGGTGT55970.17209005010812126No Hit
CCCGCACACTAGGTAGAGAGCTTCCACCAGGTGTGAGCCGCACAGGTGTT54050.1661866572868314No Hit
GGCTGCAGGCTGCCTGCACCAGGGCCCCCGCCCAGCTCCACCTGCCCCAC53220.16363466976512797No Hit
CTGCAGGGACCCCTCCAGGGCCAAGGGCTGCAGGCTGCCTGCACCAGGGC49060.15084398531899998No Hit
GCTGCAGGCTGCCTGCACCAGGGCCCCCGCCCAGCTCCACCTGCCCCACC40610.12486290753780246No Hit
CCCAGCTCCACCTGCCCCACCTGCAGGTCCTCTGCCTCCCGGCGGGTCTT39850.12252614787937523No Hit
CTTGGGTGTGTAGAAGAAGCCTCGTTCCCCGCACACTAGGTAGAGAGCTT38650.11883652736606908No Hit
GGCGGGTCTTGGGTGTGTAGAAGAAGCCTCGTTCCCCGCACACTAGGTAG35640.10958172924519281No Hit
CCCCGCCCAGCTCCACCTGCCCCACCTGCAGGTCCTCTGCCTCCCGGCGG34750.10684526069782407No Hit
GCCGCACAGGTGTTGGTTCACAAAGGCTGCGGCTGGGTCAGGTCCCCAGA34240.10527717197966896No Hit
GCAGTAGTTCTCCAGCTGGTAGAGGGAGCAGATGCTGGTACAGCATTGTT34100.10484671625311658No Hit
TGTAGAAGAAGCCTCGTTCCCCGCACACTAGGTAGAGAGCTTCCACCAGG33190.10204875403052606No Hit
GTTCACAAAGGCTGCGGCTGGGTCAGGTCCCCAGAGGGCCAGCAGCGCCA32590.100203943773873No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)