FastQCFastQC Report
Wed 8 May 2024
EGAF00008072605

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008072605
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3346730
Total Bases251 Mbp
Sequences flagged as poor quality0
Sequence length75
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTAGAAGAAGCCTCGTTCCCCGCACACTAGGTAGAGAGCTTCCACCAGGT42280.12633227060444074No Hit
CCGCACACTAGGTAGAGAGCTTCCACCAGGTGTGAGCCGCACAGGTGTTG37440.1118703928909712No Hit
GCCACGCTTCTGCAGGGACCCCTCCAGGGCCAAGGGCTGCAGGCTGCCTG37300.11145207411413528No Hit
CCACGCTTCTGCAGGGACCCCTCCAGGGCCAAGGGCTGCAGGCTGCCTGC37020.11061543656046349No Hit
GCTGGTTCAAGGGCTTTATTCCATCTCTCTCGGTGCAGGAGGCGGCGGGT36350.10861348241417743No Hit
GGGCTGCAGGCTGCCTGCACCAGGGCCCCCGCCCAGCTCCACCTGCCCCA34790.10395221604372028No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)