FastQCFastQC Report
Wed 8 May 2024
EGAF00008072749

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008072749
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8922832
Total Bases669.2 Mbp
Sequences flagged as poor quality0
Sequence length75
%GC50

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGGTTCAAGGGCTTTATTCCATCTCTCTCGGTGCAGGAGGCGGCGGGT147860.16570972085992428No Hit
GTAGAAGAAGCCTCGTTCCCCGCACACTAGGTAGAGAGCTTCCACCAGGT143690.1610363167209693No Hit
GCCACGCTTCTGCAGGGACCCCTCCAGGGCCAAGGGCTGCAGGCTGCCTG136740.153247309822711No Hit
GGGCTTTATTCCATCTCTCTCGGTGCAGGAGGCGGCGGGTGGGGGGCTGC123500.13840897150142467No Hit
CCACGCTTCTGCAGGGACCCCTCCAGGGCCAAGGGCTGCAGGCTGCCTGC112860.12648450626437885No Hit
GGGCTGCAGGCTGCCTGCACCAGGGCCCCCGCCCAGCTCCACCTGCCCCA111560.1250275697222586No Hit
CTGCAGGGACCCCTCCAGGGCCAAGGGCTGCAGGCTGCCTGCACCAGGGC111480.12493791208889735No Hit
CCGCACACTAGGTAGAGAGCTTCCACCAGGTGTGAGCCGCACAGGTGTTG104750.11739546368238246No Hit
CACGCTTCTGCAGGGACCCCTCCAGGGCCAAGGGCTGCAGGCTGCCTGCA99650.11167978955560298No Hit
CCCGCACACTAGGTAGAGAGCTTCCACCAGGTGTGAGCCGCACAGGTGTT94860.10631153875809833No Hit
GTGTAGAAGAAGCCTCGTTCCCCGCACACTAGGTAGAGAGCTTCCACCAG93250.10450717888670323No Hit
TGTAGAAGAAGCCTCGTTCCCCGCACACTAGGTAGAGAGCTTCCACCAGG90470.10139157612739991No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)